Bookedited by Agamemnon J. Carpousis.
Contents:
Characterizing the role of exoribonucleases in the control of microbial gene expression : differential RNA-Seq / Vânia Pobre and Cecília M. Arraiano
Conformational studies of bacterial chromosomes by high-throughput sequencing methods / Virginia S. Lioy and Frederic Boccard
Large-scale measurement of mRNA degradation in Escherichia coli : to delay or not to delay / Sandrine Laguerre, Ignacio Gonzalez, Sebastien Nouaille, Annick Moisan, Nathalie Villa-Vialaneix, Christine Gaspin, Marie Bouvier, Agamemnon J. Carpousis, Muriel Cocaign-Bousquet, and Laurence Girbal
FASTBAC-Seq : functional analysiS of toxin-antitoxin systems in BACteria by deep sequencing / Sara Masachis, Nicolas J. Tourasse, Sandrine Chabas, Olivier Bouchez, and Fabien Darfeuille
The challenges of genome-wide studies in a unicellular eukaryote with two nuclear genomes / Sandra Duharcourt and Linda Sperling
CLIP-seq in bacteria : global recognition patterns of bacterial RNA-binding proteins / Liis Andresen and Erik Holmqvist
High-resolution profiling of NMD targets in yeast / Feng He, Alper Celik, Richard Baker, and Allan Jacobson
Generation of a metagenomics proximity ligation 3C library of a mammalian gut microbiota / Théo Foutel-Rodier, Agnes Thierry, Romain Koszul, and Martial Marbouty
Genome-wide mapping of yeast retrotransposon integration target sites / Anastasia Barkova, Amna Asif-Laidin, and Pascale Lesage
Genome-wide quantitation of protein synthesis rates in bacteria / Grace E. Johnson and Gene-Wei Li
On the prowl : an in vivo method to identify RNA partners of a sRNA / Marie-Claude Carrier, Claire Morin, and Eric Masse
Analysis of bacterial transcription by "massively systematic transcript end readout," MASTER / Irina O. Vvedenskaya, Seth R. Goldman, and Bryce E. Nickels
Transcriptomic approaches for studying quorum sensing in Vibrio cholerae / Roman Herzog and Kai Papenfort
In vitro study of the major Bacillus subtilis ribonucleases Y and J / Liliana Mora, Saravuth Ngo, Soumaya Laalami, and Harald Putzer
Mapping 5'-ends and their phosphorylation state with EMOTE, TSS-EMOTE, and nEMOTE / Peter Redder
MS2-affinity purification coupled with RNA sequencing approach in the human pathogen Staphylococcus aureus / David Lalaouna, Emma Desgranges, Isabelle Caldelari, and Stefano Marzi
Noncoding RNAs in archaea : genome-wide identification and functional classification / Anne Buddeweg, Michael Daume, Lennart Randau, and Ruth A. Schmitz
Methodology for ribosome profiling of key stages of the Caulobacter crescentus cell cycle / James R. Aretakis, Nadra Al-Husini, and Jared M. Schrader
Transcriptome-wide analysis of protein-RNA and RNA-RNA interactions in pathogenic bacteria / Jai J. Tree, Kenn Gerdes, and David Tollervey
Profiling RNA polymerase II phosphorylation genome-wide in fission yeast / Tea Kecman, Dong-Hyuk Heo, and Lidia Vasiljeva
Toward cell type-specific in vivo dual RNA-seq / Lutz Frönicke, Denise N. Bronner, Mariana X. Byndloss, Bridget McLaughlin, Andreas J. Baumler, and Alexander J. Westermann
Genomic analysis of DNA double-strand break repair in Escherichia coli / A.M. Mahedi Hasan, Benura Azeroglu, and David R.F. Leach.