BookHamid Mirzaei, Martin Carrasco, editors.
Contents:
Sample preparation strategies for proteomics. Proteomes, their compositions and their sources / Anna Kwasnik, Claire Tonry, Angela Mc Ardle, Aisha Qasim Butt, Rosanna Inzitari [and others]
Protein fractionation and enrichment prior to proteomics sample preparation / Andrew J. Alpert
Sample preparation for mass spectrometry-based proteomics; from proteomes to peptides / John C. Rogers, Ryan D. Bomgarden
Plant structure and specificity: challenges and sample preparation considerations for proteomics / Sophie Alvarez, Michael J. Naldrett
Improving proteome coverage by reducing sample complexity via chromatography / Uma Kota, Mark L. Stolowitz
Mass spectrometry for proteomics analysis. Database search engines: paradigms, challenges and solutions / Kenneth Verheggen, Lennart Martens, Frode S. Berven, Harald Barsnes, Marc Vaudel
Mass analyzers and mass spectrometers / Anthony M. Haag
Top-down mass spectrometry: proteomics to proteoforms / Steven M. Patrie
Bioinfomatic tools for proteomics data analysis and interpretation. Platforms and pipelines for proteomics data analysis and management / Marius Cosmin Codrea, Sven Nahnsen
Tandem mass spectrum sequencing: an alternative to database search engines in shotgun proteomics / Thilo Muth, Erdmann Rapp, Frode S. Berven, Harald Barsnes, Marc Vaudel
Visualization, inspection and interpretation of shotgun proteomics identification results / Ragnhild R. Lereim, Eystein Oveland, Frode S. Berven, Marc Vaudel, Harald Barsnes
Protein inference / Zengyou He, Ting Huang, Can Zhao, Ben Teng
Modification site localization in peptides / Robert J. Chalkley
Useful web resources / Andre Bui, Maria D. Person
Mass spectrometry-based protein quantification / Yun Chen, Fuqiang Wang, Feifei Xu, Ting Yang
Bioinformatics tools for proteomics data interpretation / Karla Grisel Calderón-González, Jesús Hernández-Monge, María Esther Herrera-Aguirre [and others]
Applications of proteomis technologies in biological and medical sciences. Identification, quantification, and site localization of protein posttranslational modifications via mass spectrometry-based proteomics / Mi Ke, Hainan Shen, Linjue Wang, Shusheng Luo, Lin Lin, Jie Yang, Ruijun Tian
Protein-protein interaction detection via mass spectrometry-based proteomics / Benedetta Turriziani, Alexander von Kriegsheim, Stephen R. Pennington
Protein structural analysis via mass spectrometry-based proteomics / Antonio Artigues, Owen W. Nadeau, Mary Ashley Rimmer, Maria T. Villar, Xiuxia Du [and others]
Introduction to clinical proteomics / John E. Wiktorowicz, Allan R. Brasier
Clinical proteomics. Discovery of candidate biomarkers / John E. Wiktorowicz, Kizhake V. Soman
Statistical approaches to candidate biomarker panel selection / Heidi M. Spratt, Hyunsu Ju
Qualification and verification of protein biomarker candidates / Yingxin Zhao, Allan R. Brasier
Protocol for standardizing high-to-moderate abundance protein biomarker assessments through an mrm-with-standard-peptides quantitative approach / Andrew J. Percy, Juncong Yang, Andrew G. Chambers, Yassene Mohammed, Tasso Miliotis [and others].
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