Bookedited by Benjamin L. Kidder.
Contents:
Efficient Library Preparation for Next-Generation Sequencing Analysis of Genome-Wide Epigenetic and Transcriptional Landscapes in Embryonic Stem Cells
Analysis of Next-Generation Sequencing Data Using Galaxy
edgeR for Differential RNA-seq and ChIP-seq Analysis: An Application to Stem Cell Biology
Use Model-based Analysis of ChIP-Seq (MACS) to Analyze Short Reads Generated by Sequencing Protein-DNA Interactions in Embryonic Stem Cells
Spatial Clustering for Identification of ChIP-Enriched Regions (SICER) to Map Regions of Histone Methylation Patterns in Embryonic Stem Cells
Identifying Stem Cell Gene Expression Patterns and Phenotypic Networks with AutoSOME
Visualization and Clustering of High-Dimensional Transcriptome Data Using GATE
Interpreting and Visualizing ChIP-seq Data with the seqMINER Software
A Description of the Molecular Signatures Database (MSigDB) Website
Use of Genome-Wide RNAi Screens to Identify Regulators of Embryonic Stem Cell Self-Renewal and Pluripotency
Correlating Histone Modification Patterns with Gene Expression Data During Hematopoiesis
In Vitro Maturation and In Vitro Fertilization of Mouse Oocytes and Preimplantation Embryo Culture
Derivation and Manipulation of Trophoblast Stem Cells from Mouse Blastocysts
Conversion of Epiblast Stem Cells to Embryonic Stem Cells Using Growth Factors and Small Molecule Inhibitors
Generation of Induced Pluripotent Stem Cells Using Chemical Inhibition and Three Transcription Factors
Transdifferentiation of Mouse Fibroblasts and Hepatocytes to Functional Neurons
Direct Lineage Conversion of Pancreatic Exocrine to Endocrine Beta-Cells In Vivo with Defined Factors
Direct Reprogramming of Cardiac Fibroblasts to Cardiomyocytes Using MicroRNAs
Reprogramming Somatic Cells into Pluripotent Stem Cells Using miRNAs.