Bookedited by David Edwards.
Contents:
Using GenBank / Eric W. Sayers and Ilene Karsch-Mizrachi
UniProtKB/Swiss-Prot, the manually annotated section of the UniProt knowledgebase : how to use the entry view / Emmanuel Boutet ... [et al.]
KEGG bioinformatics resource for plant genomics and metabolomics / Minoru Kanehisa
Plant pathway databases / Pankaj Jaiswal and Björn Usadel
Plant ontology : a tool for plant genomics / Laurel Cooper and Pankaj Jaiswal
Ensembl plants : integrating tools for visualizing, mining, and analyzing plant genomics data / Dan Bolser ... [et al.]
Gramene : a resource for comparative analysis of plants genomes and pathways / Marcela Karey Tello-Ruiz ... [et al.]
PGSB/MIPS plant genome information resources and concepts for the analysis of complex grass genomes / Manuel Spannagl ... [et al.]
MaizeGDB : the maize genetics and genomics database / Lisa Harper ... [et al.]
WheatGenome.info : a resource for wheat genomics resource / Kaitao Lai
User guidelines for the brassica database : BRAD / Xiaobo Wang, Feng Cheng, and Xiaowu Wang
TAG sequence identification of genomic regions using TAGdb / Pradeep Ruperao
Short read alignment using SOAP2 / Bhavna Hurgobin
Tablet : visualizing next-generation sequence assemblies and mappings / Iain Milne ... [et al.]
Analysis of genotyping-by-sequencing (GBS) data / Sateesh Kagale ... [et al.]
Skim-based genotyping by sequencing using a double haploid population to call SNPs, infer gene conversions, and improve genome assemblies / Philipp Emanuel Bayer
Finding and characterizing repeats in plant genomes / Jacques Nicolas, Pierre Peterlongo, and Sébastien Tempel
Analysis of RNA-Seq data using TopHat and cufflinks / Sreya Ghosh and Chon-Kit Kenneth Chan.