Bookedited by Erik Dassi.
Contents:
Regulation of gene expression / Alessandro Quattrone and Erik Dassi
Computational approach for the discovery of protein-RNA networks / Domenica Marchese, Carmen Maria Livi, and Gian Gaetano Tartaglia
Transcriptional regulation with CRISPR/Cas9 effectors in mammalian cells / Hannah Pham, Nicola A. Kearns, and René Maehr
Studying the translatome with polysome profiling / Paola Zuccotti and Angelika Modelska
Exploring ribosome positioning on translating transcripts with ribosome profiling / Pieter Spealman ... [et al.]
Studying isoform-specific mRNA recruitment to polyribosomes with Frac-seq / Rocio T. Martinez-Nunez and Jeremy R. Sanford
Use of the pBUTR reporter system for scalable analysis of 3' UTR-mediated gene regulation / Arindam Chaudhury and Joel R. Neilson
Comprehensive identification of RNA-binding proteins by RNA interactome capture / Alfredo Castello ... [et al.]
Identifying RBP targets with RIP-seq / Hans-Herman Wessels ... [et al.]
PAR-CLIP : a method for transcriptome-wide identification of RNA binding protein interaction sites / Charles Danan, Sudhir Manickavel, and Markus Hafner
Profiling the binding sites of RNA-binding proteins with nucleotide resolution using iCLIP / FX Reymond Sutandy, Andrea Hildebrandt, and Julian König
Pipeline for PAR-CLIP data analysis / Marvin Jens
Capture and identification of miRNA targets by biotin pulldown and RNA-seq / Shen Mynn Tan and Judy Lieberman
Identification of miRNA-target RNA interactions using CLASH / Aleksandra Helwak and David Tollervey
Genome-wide analysis of A-to-I RNA editing / Yiannis A. Savva, Georges St. Laurent, and Robert A. Reenan
Nucleotide-level profiling of m5C RNA methylation / Tennille Sibbritt ... [et al.]
Probing N 6-methyladenosine (m6A) RNA modification in total RNA with SCARLET / Nian Liu and Tao Pan
Genome-wide identification of alternative polyadenylation events using 3'T-fill / Stefan Wilkening, Vicent Pelechano, and Lars M. Steinmetz
Genome-wide profiling of alternative translation initiation sites / Xiangwei Gao, Ji Wan, and Shu-Bing Qian
Genome-wide study of mRNA isoform half-lives / Joseph V. Geisberg and Zarmik Moqtaderi
Visualizing mRNA dynamics in live neurons and brain tissues / Hye Yoon Park and Minho Song
Single-molecule live-cell visualization of pre-mRNA splicing / Robert M. Martin ... [et al.].