Bookedited by Cathy H. Wu, Chuming Chen.
Contents:
Protein bioinformatics databases and resources
A guide to UniProt for protein scientists
Interpro protein classification
Reactome knowledgebase of human biological pathways and processes
eFIP: A tool for mining functional impact of phosphorylation from literature
A tutorial on protein ontology resources for proteomic studies
Structure-guided rule-based annotation of protein functional sites in UniProt knowledgebase
Modeling mass spectrometry-based protein analysis
Protein identification from tandem mass spectra by database searching
LC-MS data analysis for differential protein expression detection
Protein identification by spectral networks analysis
Software pipeline and data analysis for ms/ms proteomics: The trans-proteomic pipeline
Analysis of high-throughput ELISA microarray data
Proteomics databases and repositories
Preparing molecular interaction data for publication
Submitting proteomics data to PRIDE using PRIDE converter
Automated data integration and determination of posttranslational modifications with the protein inference engine
An integrated top-down and bottom-up strategy for characterization of protein isoforms and modifications
Phosphoproteome resource for systems biology research
Protein-centric data integration for functional analysis of comparative proteomics data
Integration of proteomic and metabolomic profiling as well as metabolic modeling for the functional analysis of metabolic networks
Time series proteome profiling.