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- ArticleChen M, Yan C, Ma Y, Zhang XE.Biomaterials. 2021 01;268:120544.Bimolecular fluorescence complementation (BiFC) is an effective tool for visualizing protein-protein interactions (PPIs). However, a BiFC system with long wavelength and high fluorescence intensity is yet to be developed for in vivo imaging. In this study, we constructed a tandem near-infrared BiFC (tBiFC) system by splitting a near-infrared phytochrome, IFP2.0. This system allows the identification and visualization of PPIs in live cells and living mice. The photophysical properties of the complementary fluorescence of the tBiFC system were similar to those of its parent protein IFP2.0, but the intensity was twice that of a single-copy IFP2.0-based BiFC system. Compared with previously reported near infrared BiFC systems-iRFP-BiFC and IFP1.4-BiFC-the signal intensity of the tBiFC system increased by ~1.48- and ~400-fold for weak PPIs in living cells, and ~1.51- and ~8-fold for strong PPIs, respectively. When applied to imaging PPIs in live mice, the complementary fluorescence intensity of the tBiFC system was also significantly higher than that of the other near-infrared BiFC systems. The use of this bright phytochrome in a tandem arrangement constitutes a powerful tool for imaging PPIs in the near infrared region.
- ArticleMullen M, Giordano BC.Talanta. 2020 Mar 01;209:120544.Secondary electrospray corona discharge ionization (SECDI) combines the principles of secondary electrospray ionization (SESI) and corona discharge (CD) to achieve higher sensitivity, which is demonstrated through the detection of 2,4,6-trinitrotoluene (TNT) and 2,6-dinitrotoluene (2,6-DNT) vapors using ion mobility spectrometry (IMS). Using SECDI, enhancements in the IMS signal for TNT and 2,6-DNT vapors at trace concentrations are as much as 2-26 times that observed with CD or SESI alone. The enhancement in sensitivity is hypothesized to result from an increase in ionization efficiency driven by a higher number of reactant ions associated with SECDI compared to either technique individually. The ability of SECDI to achieve higher sensitivity without the aid of dopant molecules demonstrates its merit as an alternative ionization technique.
- ArticleLuo Q, Gao L, Yang Z, Chen S, Yang J, Lu S.Neuroimage. 2024 Apr 01;289:120544.Natural poetic speeches (i.e., proverbs, nursery rhymes, and commercial ads) with strong prosodic regularities are easily memorized by children and the harmonious acoustic patterns are suggested to facilitate their integrated sentence processing. Do children have specific neural pathways for perceiving such poetic utterances, and does their speech development benefit from it? We recorded the task-induced hemodynamic changes of 94 children aged 2 to 12 years using functional near-infrared spectroscopy (fNIRS) while they listened to poetic and non-poetic natural sentences. Seventy-three adult as controls were recruited to investigate the developmental specificity of children group. The results indicated that poetic sentences perceiving is a highly integrated process featured by a lower brain workload in both groups. However, an early activated large-scale network was induced only in the child group, coordinated by hubs for connectivity diversity. Additionally, poetic speeches evoked activation in the phonological encoding regions in the children's group rather than adult controls which decreases with children's ages. The neural responses to poetic speeches were positively linked to children's speech communication performance, especially the fluency and semantic aspects. These results reveal children's neural sensitivity to integrated speech perception which facilitate early speech development by strengthening more sophisticated language networks and the perception-production circuit.
- ArticleMa L, Chai C, Wu W, Qi P, Liu X, Hao J.Carbohydr Polym. 2023 Apr 01;305:120544.A class of hydrophilic polymers known as "hydrogels" have extensive water content and three-dimensional crosslinked networks. Since the old period, they have been utilized as plant culture substrates to get around the drawbacks of hydroponics and soil. Numerous hydrogels, particularly polysaccharides with exceptional stability, high clarity, and low cost can be employed as plant substrates. Although numerous novel and functionalized hydrogels might assist in overcoming the drawbacks of conventional media and giving them more functions, the existing hydrogel-based plant growth substrates rarely benefit from the developments of gels in the previous few decades. Prospects include the development of new conduction techniques, the creation of potential new hydrogels, and the functionalization of the hydrogel as plant culture substrates.
- ArticleLi J, Liao Q, Wang Y, Wang X, Liu J, Zha R, He JZ, Zhang M, Zhang W.J Environ Manage. 2024 Apr;356:120544.Biofilters are the important source and sink of antibiotic resistance genes (ARGs) and antibiotic resistance bacteria (ARB) in the drinking water. Current studies generally ascribed the prevalence of BAR in biofilter from the perspective of gene behavior, i.e. horizontal gene transfer (HGT), little attentions have been paid on the ARGs carrier- ARB. In this study, we proposed the hypothesis that ARB participating in pollutant metabolism processes and becoming dominant is an important way for the enrichment of ARGs. To verify this, the antibiotic resistome and bacterial functional metabolic pathways of a sand filter was profiled using heterotrophic bacterial plate counting method (HPC), high-throughput qPCR, Illumina Hiseq sequencing and PICRUSt2 functional prediction. The results illustrated a significant leakage of ARB in the effluent of the sand filter with an average absolute abundance of approximately 102-103 CFU/mL. Further contribution analysis revealed that the dominant genera, such as Acinetobacter spp., Aeromonas spp., Elizabethkingia spp., and Bacillus spp., were primary ARGs hosts, conferring resistance to multiple antibiotics including sulfamethoxazole, tetracycline and β-lactams. Notably, these ARGs hosts were involved in nitrogen metabolism, including extracellular nitrate/nitrite transport and nitrite reduction, which are crucial in nitrification and denitrification in biofilters. For example, Acinetobacter spp., the dominant bacteria in the filter (relative abundance 69.97 %), contributed the majority of ARGs and 53.79 % of nitrite reduction function. That is, ARB can predominate by participating in the nitrogen metabolism pathways, facilitating the enrichment of ARGs. These findings provide insights into the stable presence of ARGs in biofilters from a functional metabolism perspective, offering a significant supplementary to the mechanisms of the emergence, maintenance, and transmission of BARin drinking water.
- ArticleYao X, Ding R, Zhou Y, Wang Z, Liu Y, Fu D, Zhang L.Water Res. 2023 Oct 15;245:120544.Internal nutrient loading in shallow lakes has long been known as a key driver of eutrophication, especially after external loading reductions. Earlier efforts have been made to quantity the size and potential release of internal nutrient pools in lakes. Yet, links among substrates, microbial processes, and the size and actual release of internal nutrient pools remain largely unclear. To assess the links, sediment organic matter in Lake Taihu, China, was characterized by combining optical measurements, and lake-wide sediment gross nitrogen (N) transformations were measured using the stable isotope (15N) dilution technique. Meanwhile, respirations and nutrient fluxes across the sediment-water interface (SWI) were measured by conducting intact core continuous-flow incubations. The cause-effect relationships among sediment physicochemical parameters (especially organic matter properties), gross N transformations, extractable nutrient concentrations, and nutrient fluxes across the SWI were revealed by partial least square path models. Results showed that environmental controls on the N transformation rates at different seasons varied, with sediment-derived dissolved organic matter abundance being more important than other variables in driving the rates during summer blooms. This study put a step toward revealing the significant positive effects of sediment organic matter mineralization on porewater nutrient concentrations and then on nutrient fluxes across the SWI at late season. The significant positive correlation between the gross N mineralization rates and ammonium fluxes across the SWI and the estimated considerable volume of net N mineralization in summer further suggested that algal blooms can get substantial inorganic N from sediment N mineralization during the lake N limitation period. Overall, this paper presents new insights into the substrates- and microbial process-driven internal nutrient loading of shallow lakes, which is the fundamental driving force of internal nutrient loading formation.
- ArticleTarnutzer AA, Ward BK, Shaikh AG.J Neurol Sci. 2023 02 15;445:120544.BACKGROUND: Advances in neurotechnologies are revolutionizing our understanding of complex neural circuits and enabling new treatments for disorders of the human brain. In the vestibular system, electromagnetic stimuli can now modulate vestibular reflexes and sensations of self-motion by artificially stimulating the labyrinth, cerebellum, cerebral cortex, and their connections.
OBJECTIVE: In this narrative review, we describe evolving neuromodulatory techniques including magnetic vestibular stimulation (MVS), deep brain stimulation (DBS), transcranial magnetic stimulation (TMS), and transcranial direct-current stimulation (tDCS) and discuss current and potential future application in the field of neuro-otology.
RESULTS: MVS triggers both vestibular nystagmic (persistent) and perceptual (lasting ∼1 min) responses that may serve as a model to study central adaptational mechanisms and pathomechanisms of hemispatial neglect. By systematically mapping DBS electrodes, targeted stimulation of central vestibular pathways allowed modulating eye movements, vestibular heading perception, spatial attention and graviception, resulting in reduced anti-saccade error rates and hypometria, improved heading discrimination, shifts in verticality perception and transiently decreased spatial attention. For TMS/tDCS treatment trials have demonstrated amelioration of vestibular symptoms in various neuro-otological conditions, including chronic vestibular insufficiency, Mal-de-Debarquement and cerebellar ataxia.
CONCLUSION: Neuromodulation has a bright future as a potential treatment of vestibular dysfunction. MVS, DBS and TMS may provide new and sophisticated, customizable, and specific treatment options of vestibular symptoms in humans. While promising treatment responses have been reported for TMS/tDCS, treatment trials for vestibular disorders using MVS or DBS have yet to be defined and performed. - ArticleRabello LS, Silva JR, Azevedo LC, Souza I, Torres VB, Rosolem MM, Lisboa T, Soares M, Salluh JI.PLoS One. 2015;10(3):e0120544.INTRODUCTION: Pneumonia is the most frequent type of infection in cancer patients and a frequent cause of ICU admission. The primary aims of this study were to describe the clinical and microbiological characteristics and outcomes in critically ill cancer patients with severe pneumonia.
METHODS: Prospective cohort study in 325 adult cancer patients admitted to three ICUs with severe pneumonia not acquired in the hospital setting. Demographic, clinical and microbiological data were collected.
RESULTS: There were 229 (71%) patients with solid tumors and 96 (29%) patients with hematological malignancies. 75% of all patients were in septic shock and 81% needed invasive mechanical ventilation. ICU and hospital mortality rates were 45.8% and 64.9%. Microbiological confirmation was present in 169 (52%) with a predominance of Gram negative bacteria [99 (58.6%)]. The most frequent pathogens were methicillin-sensitive S. aureus [42 (24.9%)], P. aeruginosa [41(24.3%)] and S. pneumonia [21 (12.4%)]. A relatively low incidence of MR [23 (13.6%)] was observed. Adequate antibiotics were prescribed for most patients [136 (80.5%)]. In multivariate analysis, septic shock at ICU admission [OR 5.52 (1.92-15.84)], the use of invasive MV [OR 12.74 (3.60-45.07)] and poor Performance Status [OR 3.00 (1.07-8.42)] were associated with increased hospital mortality.
CONCLUSIONS: Severe pneumonia is associated with high mortality rates in cancer patients. A relatively low rate of MR pathogens is observed and severity of illness and organ dysfunction seems to be the best predictors of outcome in this population. - ArticleWang SC, Liu GZ, Liu FF.Environ Pollut. 2023 Jan 01;316(Pt 1):120544.The toxicity of microplastics (MPs) to marine microalgae has raised much concern. However, research at metabolic level is quite limited. In this study, the physiological and metabolic effects of polystyrene (PS) and aged polystyrene (A-PS) MPs on Dunaliella salina were investigated. Both PS and A-PS inhibited the growth of microalgae, but promoted the pigment synthesis in algal cells. The oxidative stress analysis indicated that PS and A-PS induced high production of reactive oxygen species (ROS), and caused oxidative damage to algal cells. Particularly, the highest ROS level in PS and A-PS groups were 1.70- and 2.24-fold of that in the control group, respectively. Untargeted metabolomics analysis indicated that PS and A-PS significantly increased the differential metabolites. Compared with the control group, the significant upregulation of glycerophospholipids metabolites illustrated that severe membrane lipid peroxidation occurred in the MPs groups. Metabolic pathways analysis showed that PS and A-PS perturbed the amino acid-related metabolic pathways. In particular, the amino acid biosynthesis and ATP-binding cassette (ABC) transporter pathways were significantly upregulated, thus promoting nitrogen storage and transmembrane transport in Dunaliella salina. Transmembrane transport requires a large amount of ATP; as a result, algal cell division is inhibited. In addition, A-PS stimulated more active glutathione metabolism than PS. These results enrich the understanding of the toxicity of PS MPs to microalgae at the metabolic level, and are helpful for further assessing the ecological impacts of MPs on microalgae.
- ArticleAwad L, El-Kork N, Chamieh G, Korek M.Spectrochim Acta A Mol Biomol Spectrosc. 2022 Feb 15;267(Pt 2):120544.Due to the absence of the electronic structure of the YP molecule and its ions in literature, this work is conducted via an ab initio Complete Active Space Self Consistent Field and the Multi-Reference Configuration Interaction with Davidson correction calculation (CASSCF/MRCI + Q) to investigate the low-lying electronic states of these molecules. Adiabatic potential energy curves (PECs) along with static dipole moment (DM) curves for 27, 24, and 21 low-lying electronic states in the representation of 2s+1Λ(+/-) for YP, YP+, and YP- molecules have been investigated, respectively. For the low-lying electronic states of the YP molecule and their anion and cation, the spectroscopic constants Re, Te, ωe, ωexe, Be, De are provided. The rovibrational constants Ev, Bv, Dv, and the abscissa of turning points Rmin and Rmax (up to vibrational level v = 37) are calculated using the canonical functions approach and referring to the calculated data from the PECs. Perturbation theory method is also used to compare our data's validity, as no results are presented in the literature for these molecules.
- Bookedited by Amine Kamen and Laura Cervera.Summary: This book focuses on cell culture-produced viral vaccines to meet the needs of the rapidly expanding research and development in academia and industry in the field. This book introduces the basic principles of vaccination and the manufacturing of viral vaccines. Bioprocessing of Viral Vaccines, will provide an overview of the advanced strategies needed to respond to the challenges of new and established viral infection diseases. The first few chapters cover the basics of virology and immunology as essential concepts to understand the function and design of viral vaccines. The core of the content is dedicated to process development, including upstream processing and cell culture of viral vaccines, downstream processing, and extensive analytical technologies specific to viral vaccines. Advanced process analytical technologies (PAT) and Quality by Design (QbD) concepts are also introduced in the context of vaccine manufacturing. The case studies included cover inactivated, attenuated vaccines exemplified by influenza vaccines, sub-unit vaccines exemplified by Virus Like Particles (VLPs: HPV vaccines) and sub-unit vaccines (Flublock), vectored vaccines: adenoviruses and Vesicular stomatitis Virus (VSV) vectored vaccines, genomic vaccines (DNA and mRNA) vaccines as developed for COVID-19 response in particular and a review of COVID-19 vaccines approved or in advanced clinical trials. This book is aimed at graduate engineers and professionals in the fields of vaccinology, bioprocessing, and biomanufacturing of viral vaccines.
Contents:
Bioprocessing of viral vaccines, introduction / Amine Kamen, Laura Cervera
Introduction to virology / Shantoshini Dash
Introduction to basic immunology and vaccine design / Alaka Mullick, Shantoshini Dash
Cell lines for vaccine production / Isabelle Knott [and others]
Upstream processing for viral vaccines-General aspects / Lars Pelz [and others]
Upstream processing for viral vaccines, process intensification / Sven Göbel [and others]
Downstream processing of viral-based vaccines / Rita P. Fernandes [and others]
Analytics and virus production processes / Emma Petiot
Manufacturing of seasonal and pandemic influenza vaccines, a case study / Cristina A. T. Silva [and others]
Recombinant vaccines: gag-based VLPs / Laura Cervera [and others]
Vectored vaccines / Zeyu Yang [and others]
Design and production of vaccines against COVID-19 using established vaccine platforms / Ryan Kligman [and others].Digital Access TandFonline [2022]