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  • Book
    edited by Rune Matthiesen.
    Summary: Since the publishing of the first edition, the methodologies and instrumentation involved in the field of mass spectrometry-based proteomics has improved considerably. Fully revised and expanded, Mass Spectrometry Data Analysis in Proteomics, Second Edition presents expert chapters on specific MS-based methods or data analysis strategies in proteomics. The volume covers data analysis topics relevant for quantitative proteomics, post translational modification, HX-MS, glycomics, and data exchange standards, among other topics. Written in the highly successful Methods in Molecular Biology series format, chapters include brief introductions to their respective subjects, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Updated and authoritative, Mass Spectrometry Data Analysis in Proteomics, Second Edition serves as a detailed guide for all researchers seeking to further our knowledge in the field of proteomics.

    Contents:
    Introduction to mass spectrometry-based proteomics / Rune Matthiesen and Jakob Bunkenborg
    LC-MS spectra processing / Rune Matthiesen
    Isotopic distributions / Alan L. Rockwood and Magnus Palmblad
    Retention time prediction and protein identification / Alex A. Henneman and Magnus Palmblad
    Algorithms for database-dependent search of MS/MS data / Rune Matthiesen
    Interpretation of tandem mass spectra of posttranslationally modified peptides / Jakob Bunkenborg and Rune Matthiesen
    Improving peptide identification using empirical scoring systems / Robert J. Chalkley
    Methods and algorithms for quantitative proteomics by mass spectrometry / Rune Matthiesen and Ana Sofia Carvalho
    Computational approaches to selected reaction monitoring assay design / Conrad Bessant and Jun Fan
    Feature celection and machine learning with mass spectrometry data / Susmita Datta
    Considerations in the analysis of hydrogen exchange mass spectrometry data / Thomas E. Wales, Michael J. Eggertson, and John R. Engen
    Permethylated n-glycan analysis with mass spectrometry / Zhenxin Lin and David M. Lubman
    Mass spectrometry methods for studying glycosylation in cancer / Hugo Osorio and Celso A. Reis
    Proteomics data exchange and storage : the need for common standards and public repositories / Rafael C. Jimenez and Juan Antonio Vizcaıno
    Tools for protein posttranslational modifications analysis : FAK, a case study / Catarina Fonseca [and others]
    Proteomic strategies to characterize signaling pathways / H.C. Harsha, Sneha M. Pinto, and Akhilesh Pandey
    Simple proteomics data analysis in the object-oriented powershell / Yassene Mohammed and Magnus Palmblad.
    Digital Access Springer 2013
  • Article
    Lindner G, Grosse G, Halle W, Henklein P.
    Z Mikrosk Anat Forsch. 1979;93(5):820-8.
    Explants from chick embryo PNS (ganglion trigeminale) and from CNS of embryonal rats (hippocampus) and dissociated cells from chick embryo cerebral hemispheres were cultivated in maximow chambers in the presence of various concentrations of placental serum and of a chemically synthesized tripeptide Gly-His-Lys. 1. The presence of tripeptide in the nutrient medium with a low concentration of serum did not compensate the outgrowth of nerve fibers, that take place in the growth medium. 2. In the presence of tripeptide in the nutrient medium with low concentration of serum the index of growth area increased significantly. 3. Within the first days in cell cultures 0,01 microgram tripeptide pro ml medium stimulated the outgrowth of neuronal processes. 4. The experiments indicated, that the tripeptide did not replace the serum. The possible role of tripeptide as a system in controlling neuron-glial ratio in vitro is discussed.
    Digital Access Access Options
  • Book
    Print 1955