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  • Book
    edited by Aik-Choon Tan, Paul H. Huang.
    Digital : Springer2017
    Optogenetic control of Ras/Erk signaling using the Phy-PIF system / Alexander G. Goglia, Maxwell Z. Wilson, Daniel B. DiGiorno, and Jared E. Toettcher -- Dissecting kinase effector signaling using the RapRTAP methodology / Anne-Marie Ray, Jennifer E. Klomp, Kerrie B. Collins, and Andrei V. Karginov -- Single-cell imaging of ERK signaling using fluorescent biosensors / Michael Pargett, Taryn E. Gillies, Carolyn K. Teragawa, Breanne Sparta, and John G. Albeck -- Quantification of cell signaling networks using kinase activity chemosensors / Jon R. Beck, Edward N. Harris, and Cliff I. Stains -- Expression of recombinant phosphoproteins for signal transduction studies / Karl W. Barber and Jesse Rinehart -- Allosteric modulation of Src family kinases with ATP-competitive inhibitors / Ames C. Register, Sujata Chakraborty, and Dustin J. Maly -- Characterization of ligand binding to pseudokinases using a thermal shift assay / Isabelle S. Lucet and James M. Murphy -- Proteomic profiling of protein kinase inhibitor targets by mass spectrometry / Martin Golkowski, Dustin J. Maly, and Shao-En Ong -- Utilizing the luminex magnetic bead-based suspension array for rapid multiplexed phosphoprotein Quantification / Adam Stewart and Udai Banerji -- High-content imaging and RNAi screens for investigating kinase network plasticity / Simon R. Stockwell and Sibylle Mittnacht -- Analysis of drug resistance using kinome-wide functional screens / Katherine R. Singleton, Keith T. Earley, and Lynn E. Heasley -- Identification and validation of driver kinases from next-generation sequencing data / Andri Leonidou, Barrie Peck, and Rachael Natrajan -- Label-free phosphoproteomic approach for kinase signaling analysis / Edmund Wilkes and Pedro R. Cutillas -- Cell-specific labeling for analyzing bidirectional signaling by mass spectrometry / Christopher J. Tape and Claus Jørgensen -- Characterization of the phospho-adhesome by mass Spectrometry-Based Proteomics / Joseph Robertson, Jonathan D. Humphries, Nikki R. Paul, Stacey Warwood, David Knight, Adam Byron, and Martin J. Humphries -- Analysis of phosphotyrosine signaling networks in lung cancer cell lines / Malgorzata Broncel and Paul H. Huang -- Targeted analysis of phosphotyrosine signaling by multiple reaction monitoring mass spectrometry / Leo S. Payne and Paul H. Huang -- Phosphoproteomic analysis of isolated mitochondria in yeast / Margaux Renvoise, Ludovic Bonhomme, Marlene Davanture, Michel Zivy, and Claire Lemaire -- Methodology for comprehensive analysis of toll-like receptor signaling in macrophages / Marijke Koppenol-Raab and Aleksandra Nita-Lazar -- Absolute phosphorylation stoichiometry analysis by motif-targeting quantitative mass spectrometry / Chia-Feng Tsai, Wei-Chi Ku, Yu-Ju Chen, and Yasushi Ishihama -- Identification of plant kinase substrates based on kinase assay-linked phosphoproteomics / Chuan-Chih Hsu, Justine V. Arrington, Liang Xue, and W. Andy Tao -- Mass spectrometry analysis of spatial protein networks by colocalization analysis (COLA) / Faraz K. Mardakheh -- Development of selected reaction monitoring methods to systematically quantify kinase abundance and phosphorylation stoichiometry in human samples / Kirsten Beck, Nathan Camp, Michael Bereman, James Bollinger, Jarrett Egertson, Michael MacCoss, and Alejandro Wolf-Yadlin -- Analysis of signaling networks at the single-cell level using mass cytometry / Shovik Bandyopadhyay, Daniel A.C. Fisher, Olga Malkova, and Stephen T. Oh -- Magnetic resonance spectroscopy (MRS)-based methods for examining cancer metabolism in response to oncogenic kinase drug treatment / Yuen-Li Chung -- Deconstructing the metabolic networks of oncogenic signaling using targeted liquid chromatography-tandem mass spectrometry (LC-MS/MS) / George Poulogiannis -- Modeling of receptor tyrosine kinase signaling : computational and experimental protocols / Dirk Fey, Edita Aksamitiene, Anatoly Kiyatkin, and Boris N. Kholodenko -- Interdisciplinary approach for designing kinetic models of the Ras/MAPK signaling pathway / Marcelo S. Reis, Vincent Noel, Matheus H. Dias, Layra L. Albuquerque, Amanda S. Guimaraes, Lulu Wu, Junior Barrera, and Hugo A. Armelin -- Databases and computational tools for evolutionary analysis of protein phosphorylation / Chris Soon Heng Tan -- Informatics approaches for predicting, understanding, and testing cancer drug combinations / Jing Tang -- Target inhibition maps based on responses to kinase inhibitors / Noah Berlow and Ranadip Pal -- Partial least squares regression models for the analysis of kinase signaling / Danielle L. Bourgeois and Pamela K. Kreeger.