Bookedited by Katrin Marcus.
Contents:
Important issues in planning a proteomics experiment : statistical considerations of quantitative proteomic data / Katharina Podwojski, Christian Stephan, and Martin Eisenacher
Whereabouts of 2D gels in quantitative proteomics / Thierry Rabilloud
Proteome analysis with classical 2D-PAGE / Caroline May [and others]
Fast and sensitive coomassie staining in quantitative proteomics / Nadine Dyballa and Sabine Metzger
Silver staining of 2D dlectrophoresis gels / Thierry Rabilloud
Differential proteome analysis using 2D-DIGE / Caroline May [and others]
Quantitative mass spectrometry-based proteomics : an overview / Miroslav Nikolov, Carla Schmidt, and Henning Urlaub
Robust workflow for iTRAQ-based peptide and protein quantification / Florian Beck [and others]
Relative protein quantification by MS/MS using the tandem mass tag technology / Loic Dayon and Jean-Charles Sanchez
Rapid approach for isobaric peptide termini labeling / Christian J. Koehler [and others]
Isotope-coded protein label / Josef Kellermann and Friedrich Lottspeich
Hydroponic isotope labeling of entire plants and high-performance mass spectrometry for quantitative plant proteomics / Laurence V. Bindschedler, Davinia J.S. Mills, and Rainer Cramer
In vivo quantitative proteome profiling : planning and evaluation of SILAC experiments / Marieluise Kirchner and Matthias Selbach
SILAC for the study of mammalian cell lines and yeast protein complexes / Heike Piechura, Silke Oeljeklaus, and Bettina Warscheid
Post-digestion ¹⁸O exchange/labeling for quantitative shotgun proteomics of membrane proteins / Xiaoying Ye [and others]
Application of label-free proteomics for differential analysis of lung carcinoma cell line A549 / Barbara Sitek [and others]
Absolute quantification of proteins using standard peptides and multiple reaction monitoring / Carla Schmidt and Henning Urlaub
Absolute multiplexed protein quantification using QconCAT technology / Philip J. Brownridge [and others]
Practical guide to the FLEXIQuant method / Sasha Singh [and others]
Label-free protein quantitation using weighted spectral counting / Christine Vogel and Edward M. Marcotte
Discovering the phosphoproteome of the hydrophobic cytochrome c oxidase membrane protein complex / Stefan Helling [and others]
KiC assay : a quantitative mass spectrometry-based approach / Yadong Huang and Jay J. Thelen
Robust and high-throughput sample preparation for (semi- )quantitative analysis of N-glycosylation profiles from plasma samples / L. Renee Ruhaak [and others]
quantitative redox proteomics : the NOxICAT method / Claudia Lindemann and Lars I. Leichert
Quantitative analysis of S-nitrosylated proteins / Federico Torta and Angela Bachi
Analysis of ubiquitinated proteome by quantitative mass spectrometry / Chan Hyun Na and Junmin Peng
Identification of endogenous SUMO1 accepter sites by mass spectrometry / He-Hsuan Hsiao, Erik Meulmeester, and Henning Urlaub
Search and decoy : the automatic identification of mass spectra / Martin Eisenacher [and others]
Software tools for MS-based quantitative proteomics : a brief overview / Simone Lemeer [and others]
iTRAQ data interpretation / Marc Vaudel [and others]
MSQuant : a platform for stable isotope-based quantitative proteomics / Joost W. Gouw and Jeroen Krijgsveld.