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  • Book
    edited by Juan I. Castrillo, Stephen G. Oliver.
    Digital : Springer2011
    Yeast systems biology : the challenge of eukaryotic complexity / Juan I. Castrillo and Stephen G. Oliver -- Saccharomyces cerevisiae : gene annotation and genome variability, state of the art through comparative genomics / Ed Louis -- Genome-wide measurement of histone H3 replacement dynamics in yeast / Oliver J. Rando -- Genome-wide approaches to studying yeast chromatin modifications / Dustin E. Schones, Kairong Cui, and Suresh Cuddapah -- Absolute and relative quantification of mRNA expression (transcript analysis) / Andrew Hayes, Bharat M. Rash, and Leo A.H. Zeef -- Enrichment of unstable non-coding RNAs and their genome-wide identification / Helen Neil and Alain Jacquier -- Genome-wide transcriptome analysis in yeast using high-density tiling arrays / Lior David, Sandra Clauder-Munster, and Lars M. Steinmetz -- RNA sequencing / Karl Waern, Ugrappa Nagalakshmi, and Michael Snyder -- Polyadenylation state microarray (PASTA) analysis / Traude H. Beilharz and Thomas Preiss -- Enabling technologies for yeast proteome analysis / Johanna Rees and Kathryn Lilley -- Protein turnover methods in single-celled organisms : dynamic SILAC / Amy J. Claydon and Robert J. Beynon -- Protein-protein interactions and networks : forward and reverse edgetics / Benoit Charloteaux [and others] -- Use of proteome arrays to globally identify substrates for E3 ubiquitin ligases / Avinash Persaud and Daniela Rotin -- Fit-for-purpose quenching and extraction protocols for metabolic profiling of yeast using chromatography-mass spectrometry platforms / Catherine L. Winder and Warwick B. Dunn -- Automated cell : compound and environment screening system (ACCESS) for chemogenomic screening / Michael Proctor [and others] -- Competition experiments coupled with high-throughput analyses for functional genomics studies in yeast / Daniela Delneri -- Fluorescence fluctuation spectroscopy and imaging methods for examination of dynamic protein interactions in yeast / Brian D. Slaughter, Jay R. Unruh, and Rong Li -- Nutritional control of cell growth via TOR signaling in budding yeast / Yuehua Wei and X.F. Steven Zheng -- Computational yeast systems biology: a case study for the MAP kinase cascade / Edda Klipp -- Standards, tools, and databases for the analysis of yeast 'omics data / Axel Kowald and Christoph Wierling -- Computational method to search for DNA structural motifs in functional genomic elements / Stephen C.J. Parker, Aaron Harlap, and Thomas D. Tullius -- High-throughput analyses and curation of protein interactions in yeast / Shoshana J. Wodak, Jim Vlasblom, and Shuye Pu -- Noise in biological systems : pros, cons, and mechanisms of control / Yitzhak Pilpel -- Genome-scale integrative data analysis and modeling of dynamic processes in yeast / Jean-Marc Schwartz and Claire Gaugain -- Genome-scale metabolic models of Saccharomyces cerevisiae / Intawat Nookaew [and others] -- Representation, simulation, and hypothesis generation in graph and logical models of biological networks / Ken Whelan, Oliver Ray, and Ross D. King -- Use of genome-scale metabolic models in evolutionary systems biology / Balazs Papp, Balazs Szappanos, and Richard A. Notebaart -- Contributions of Saccharomyces cerevisiae to understanding mammalian gene function and therapy / Nianshu Zhang and Elizabeth Bilsland.