Bookedited by Anand R. Asthagiri, Adam P. Arkin.
Contents:
Principles of model building : an experimentation-aided approach to development of models for signaling networks / Ambhighainath Ganesan and Andre Levchenko
Integrated inference and analysis of regulatory networks from multi-level measurements / Christopher S. Poultney, Alex Greenfield, and Richard Bonneau
Swimming upstream : identifying proteomic signals that drive transcriptional changes using the interactome and multiple "-omics" datasets / Shao-shan Carol Huang and Ernest Fraenkel
A framework for modeling the relationship between cellular steady-state and stimulus-responsiveness / Paul M. Loriaux and Alexander Hoffmann
Stochastic modeling of cellular networks / Jacob Stewart-Ornstein and Hana El-Samad
Quantifying traction stresses in adherent cells / Casey M. Kraning-Rush ... [et al.]
CellOrganizer : image-derived models of subcellular organization and protein distribution / Robert F. Murphy
Spatial modeling of cell signaling networks / Ann E. Cowan ... [et al.]
Stochastic models of cell protrusion arising from spatiotemporal signaling and adhesion dynamics / Erik S. Welf and Jason M. Haugh
Nonparametric variable selection and modeling for spatial and temporal regulatory networks / Anil Aswani ... [et al.]
Quantitative models of the mechanisms that control genome-wide patterns of animal transcription factor binding / Tommy Kaplan and Mark D. Biggin
Computational analysis of live cell images of the Arabidopsis thaliana plant / Alexandre Cunha ... [et al.]
Multi-scale modeling of tissues using CompuCell3D / Maciej H. Swat ... [et al.]
Multiscale model of fibrin accumulation on the blood clot surface and platelet dynamics / Zhiliang Xu ... [et al.].