- Bio. Procedures Online
- Cold Spring Harbor Protocols
- Current Protocols
- Methods in Enzymology
- Protocols Online
Other Bioresearch Collections
Literature and Patent Search Resources
Genomes & Homology
- Ensembl Genome Browser
- NCBI Genome Browser
- UCSC Genome Browser | Videos
- MGD: Mouse Genome Database
- RGD: Rat Genome Database
- TAIR: The Arabidopsis Information Resource
- CGD: Candida Genome Database
- CMR: Comprehensive Microbial Repository
- SGD: Saccharomyces genome database
- The S. pombe Genome Project
- TGD: Tetrahymena Genome Database
Gene Expression & Function
Chemistry & Proteomics
- BIOBASE Knowledge Library | Videos
- PharmGKB | Videos
- Accelrys DiscoveryViewer
- BIND: Biomolecular Interaction Network Database
- Cn3D | Videos
- DIP: Database of Interacting Proteins
- DiscoveryGate | Videos
- NCBI MMDB
- PRIDE: Protein and Peptide Identification
- SCOP: Structural Classification of Proteins
High Throughput Data Analysis
- GeneSpring | Videos
- SAM: Significance analysis of microarrays
- Partek | CMGM
- GEO: Gene Expression Omnibus | Videos
- GO: Gene Ontologies | Videos
- Ingenuity Pathways Analysis | CMGM | Videos
- MS Visio
- MeV: Microarray multiexperiment Viewer
- MetaCore by GeneGo
- Array Express
R Learning Resources
Books for Learning R
- Introductory Statistics with R. 2002. Peter Dalgaard.
- Bioinformatics and Computational Biology Solutions Using R and Bioconductor. 2005. Robert Gentleman, Vince Carey, Wolfgang Huber, Rafael Irizarry, Sandrine Dudoit.
- R Programming for Bioinformatics. 2009. Robert Gentleman.
- Essential Resources for Quantitative PCR
- How can I download full text of a set of search results?
- How can I find information about patents?
- Molecular biology software from the Broad Institute
- What is the easiest way to find transcription start site data?
- What is the fastest way to learn SQL?
- What is the Online Bioinformatics Resources Collection?
- Where can I find good summaries of bioinformatics, genomics and proteomics topics?
- Where can I find help with designing a microarray experiment?
- Where can I find market data for health care, including research topics?
- Get started programming in Perl
- What is CMGM?
- What is Eureka?
- What is the BIOBASE Knowledge Library database?
- What is the MMDB database?
- What is the TRANSFAC database?
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