Essential Resources for Quantitative PCR
What is it?
Quantitative polymerase chain reaction (QPCR) is a set of powerful PCR techniques designed to quantify RNA transcripts. However, much up-front work is required for experiments to produce reliable data.Specific considerations for QPCR include:
- determining whether your transcript has alternatively spliced forms
- primer and probe design, particularly to ensure specificity
- sample preparation
- normalization controls
- detecting RNA degradation
- preventing degradation
Key references
- Software: PREXCEL-Q, an Excel template for calculating reactions - Addressing fluorogenic real-time qPCR inhibition using the novel custom Excel file system 'FocusField2-6GallupqPCRSet-upTool-001' to attain consistently high fidelity qPCR reactions, Gallup JM & Ackermann MR. (2006), Biol Proced Online, 8:87-152.
- Excellent review article from The Scientist (2006).
- Database of validated primers: RTPrimerDB - http://medgen.ugent.be/rtprimerdb/index.php
- Book: A-Z Quantitative PCR, Bustin (2004).
- Book: Real-Time PCR, Dorak (2006).
- QPCR listserv with 20,000+ users.
- Software: qBasePlus, a tool for automated data-analysis of real-time PCR experiments; described in Hellemans et al., Genome Biology, 2007.
Source
Lane LibrarianRecord created 1/9/2007.
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