Class: A Survey of Advanced NCBI Tools

This lecture-style workshop will survey seven powerful yet little known databases that store transcriptomic, proteomic and structural data, mostly hosted by NCBI.

In addition to exemplary application use cases, the workshop will pay special attention to each database's strengths and weaknesses.

Databases that will be reviewed:

Database	Lane FAQ	Domain
NCBI
DDD: Digital Differential Display	FAQ	Transcriptomics
GEO (including GEO Profiles)		Transcriptomics
Probe database	FAQ	Transcriptomics
Cn3D	FAQ	Structure
VAST	FAQ	Structure
Non-NCBI
Human Protein Atlas (HPA)	FAQ	Proteomics
SAV: CGAP SAGE Anatomy Viewer		Transcriptomics

Where: Class meets in Room M108.

When: Th, Oct 25, 10:00-Noon

Class Materials

•     Slides (final version)
•     Slides (finalversion)
•    class videorecording (high-res)

Instructor: Lane Librarian

pafrench, September 18, 2009