What is the Stanford Microarray Database?
What is it?
The
Stanford Microarray Database (SMD) is a repository for microarray data primarily aimed at supporting the Stanford community.
What is it for?
- Storing, finding and downloading microarray data sets, based on queries for tissues, organisms
- Storing microarray data sets in a private manner
- Applying quality controls.
What's in it?
Example record.
- Microarray data from a wide diversity of species
- Microarray data for several types of experiments, such as:
- Gene expression measurements
- Genome copy number
- Mutation detection
- DNA-protein interactions
- RNA stability
Key references
- SMD tutorials (includes videorecorded classes)
- Ball CA, Awad IA, Demeter J, Gollub J, Hebert JM, Hernandez-Boussard T, Jin H, Matese JC, Nitzberg M, Wymore F, Zachariah ZK, Brown PO, Sherlock G. (2005)
The Stanford Microarray Database accommodates additional microarray platforms and data formats, Nuc. Acids Res.
33:D580-D582.
- All PubMed references pertaining to SMD and published by the SMD group.
Source
Lane Librarian
Record created 5/17/2006.
ypouliot, September 15, 2009