- Gail, Mitchell H.
- Gail, Mitchell H.
- Chen, Tim; Zhang, Michael.
- Analyzes a list of gene IDs provided by e.g. gene expression data to find GO terms (or their parents) that occur at unexpectedly high frequency to identify commonalities between genes.
- Computational biology tool for determining whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states
- 2012 Springer Protocolsedited by Jean Peccoud.Part I. Assembly of oligonucleotides in synthons. Building block synthesis using the polymerase chain assembly method / Julie A. Marchand and Jean Peccoud. Oligonucleotide assembly in yeast to produce synthetic DNA fragments / Daniel G. Gibson. Topdown real-time gene synthesis / Mo Chao Huang [and others] De novo DNA synthesis using single-molecule PCR / Tuval Ben Yehezekel, Gregory Linshiz, and Ehud Shapiro -- Part II. Synthon assembly. SLIC : a method for sequence- and ligation-independent cloning / Mamie Z. Li and Stephen J. Elledge. Assembly of standardized DNA parts using bioBrick ends in E. coli / Olivia Ho-Shing [and others] Assembling DNA fragments by USER fusion / Narayana Annaluru [and others] Fusion PCR via novel overlap sequences / Kamonchai Cha-aim [and others] Using recombineering to generate point mutations : the oligonucleotide-based "Hit and Fix" method / Suhwan Chang, Stacey Stauffer, and Shyam K. Sharan. Using recombineering to generate point mutations : galK-based positive-negative selection method / Kajal Biswas, Stacey Stauffer, and Shyam K. Sharan. Assembling large DNA segments in yeast / Héloïse Muller [and others] Recursive construction of perfect DNA molecules and libraries from imperfect oligonucleotides / Gregory Linshiz, Tuval Ben Yehezkel, and Ehud Shapiro. Cloning whole bacterial genomes in yeast / Gwynedd A. Benders. Production of infectious poliovirus from synthetic viral genomes / Jeronimo Cello and Steffen Muller -- Part III. Software for gene synthesis. In silico design of functional DNA constructs / Alan Villalobos, Mark Welch, and Jeremy Minshull. Using DNAworks in designing oligonucleotides for PCR-based gene synthesis / David Hoover. De novo gene synthesis design using TmPrime software / Mo-Huang Li [and others] Design-a-gene with GeneDesign / Sarah M. Richardson [and others] -- Part IV. Education and security. Leading a successful iGEM team / Wayne Materi. The Build-a-Genome course / Eric M. Cooper [and others] DNA synthesis security / Ali Nouri and Christopher F. Chyba.
- Overview SUNet ID login and CMGM/PMGM computer account are required for web usage of this softwareWeb-based gene expression microarray analysis environment.
- A microarray expression data analysis tool sold by Agilent, and something of a standard for such tasks.
- Help Page Login requiredThe package is a vast collection of high-quality biological analysis tools and databases
- Burge, Christopher B.
- Padma Sudarshana ... [et. al.].
- Grauer, H.
- GFR calculator for children and adolescents up to 18 years old, Schwartz and Counahan-Barratt methodsBarratt, T. Martin; Counahan, R.; Schwartz, G. J.
- Levey, A. S.
- Rouchka, Eric C.; Thompson, Bill.A powerful, well-documented DNA and protein motif finder program.
- A DNA motif finder that is optimized for the identification of relatively weak motifs.
- Tool for biological interpretation of 'omic' data; can process large gene or protein lists.
- Free, simple charting service provided by Google. Suitable for charting simple to moderately complex biomedical data types. Large number of chart types and options.
- Duck Room Version 29- (Windows)Redwood Room Version 29- (Windows)Stone Room Version 29- (Windows)Student Computing Version 29- (Windows); Version 26- (Macintosh)
- Duck Room, duck-win7-pc9 and duck-win7-pc10 Version 6 (Windows)
- StatMate is an expensive, easy to use tool for estimating the statistical power of an experiment necessary to detect various hypothetical differences.
- Bejerano, Gill.A tool for analyzing the functional significance of cis-regulatory regions identified by localized measurements of DNA binding events across an entire genome. Incorporates both proximal and distal binding sites. Incorporates annotations from 20 ontologies.
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