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Recent Stanford Publications in PubMed

  1. Wishbone identifies bifurcating developmental trajectories from single-cell data.
    Setty M, Tadmor MD, Reich-Zeliger S, Angel O, Salame TM, Kathail P, Choi K, Bendall S, Friedman N, Pe'er D
    Nat Biotechnol
  2. Advancing Benchmarks for Genome Sequencing.
    Zook JM, Salit M
    Cell Syst
  3. Phylogenetic Profiling for Probing the Modular Architecture of the Human Genome.
    Dey G, Meyer T
    Cell Syst
  4. Fundamental Limits of Search.
    Kannan S, Tse D
    Cell Syst
  5. Perfect and Near-Perfect Adaptation in Cell Signaling.
    Ferrell JE
    Cell Syst
  6. Cytokine-Stimulated Phosphoflow of Whole Blood Using CyTOF Mass Cytometry.
    Fernandez R, Maecker H
    Bio Protoc
  7. The big challenges in modeling human and environmental well-being.
    Tuljapurkar S
    F1000Res
  8. Report of the GRAPPA-OMERACT Psoriatic Arthritis Working Group from the GRAPPA 2015 Annual Meeting.
    Orbai AM, Mease PJ, de Wit M, Kalyoncu U, Campbell W, Tillett W, Eder L, Elmamoun M, FitzGerald O, Gladman DD, Goel N, Gossec L, Lindsay CA, Steinkoenig I, Helliwell PS, McHugh NJ, Strand V, Ogdie A
    J Rheumatol
  9. Two cases of histiocytic sarcoma with BCL2 translocations and occult or subsequent follicular lymphoma.
    Fernandez-Pol S, Bangs CD, Cherry A, Arber DA, Gratzinger D
    Hum Pathol
  10. Fibroblast Growth Factor 2 Modulates Hypothalamic Pituitary Axis Activity and Anxiety Behavior Through Glucocorticoid Receptors.
    Salmaso N, Stevens HE, McNeill J, ElSayed M, Ren Q, Maragnoli ME, Schwartz ML, Tomasi S, Sapolsky RM, Duman R, Vaccarino FM
    Biol Psychiatry
  11. Is the canonical RAF-MEK-ERK signaling pathway a therapeutic target in SCLC?
    Cristea S, Sage J
    J Thorac Oncol
  12. National prevalence, causes, and risk factors for bariatric surgery readmissions.
    Garg T, Rosas U, Rivas H, Azagury D, Morton JM
    Am J Surg
  13. Children with lower respiratory tract infections and serum 25-hydroxyvitamin D3 levels: A case-control study.
    Velarde López AA, Gerber JS, Leonard MB, Xie D, Schinnar R, Strom BL
    Pediatr Pulmonol
  14. Age-Dependent Pancreatic Gene Regulation Reveals Mechanisms Governing Human β Cell Function.
    Arda HE, Li L, Tsai J, Torre EA, Rosli Y, Peiris H, Spitale RC, Dai C, Gu X, Qu K, Wang P, Wang J, Grompe M, Scharfmann R, Snyder MS, Bottino R, Powers AC, Chang HY, Kim SK
    Cell Metab
  15. Trends in Testosterone Prescription and Public Health Concerns.
    Gabrielsen JS, Najari BB, Alukal JP, Eisenberg ML
    Urol Clin North Am
  16. Optogenetic modulation in stroke recovery.
    Pendharkar AV, Levy SL, Ho AL, Sussman ES, Cheng MY, Steinberg GK
    Neurosurg Focus
  17. Radiation-induced brain injury: low-hanging fruit for neuroregeneration.
    Burns TC, Awad AJ, Li MD, Grant GA
    Neurosurg Focus
  18. Neurorestoration after stroke.
    Azad TD, Veeravagu A, Steinberg GK
    Neurosurg Focus
  19. Prioritizing schizophrenia endophenotypes for future genetic studies: An example using data from the COGS-1 family study.
    Millard SP, Shofer J, Braff D, Calkins M, Cadenhead K, Freedman R, Green MF, Greenwood TA, Gur R, Gur R, Lazzeroni LC, Light GA, Olincy A, Nuechterlein K, Seidman L, Siever L, Silverman J, Stone WS, Sprock J, Sugar CA, Swerdlow NR, Tsuang M, Turetsky B, Radant A, Tsuang DW
    Schizophr Res
  20. CDX2 as a Prognostic Biomarker in Stage II and Stage III Colon Cancer.
    Dalerba P, Sahoo D, Paik S, Guo X, Yothers G, Song N, Wilcox-Fogel N, Forgó E, Rajendran PS, Miranda SP, Hisamori S, Hutchison J, Kalisky T, Qian D, Wolmark N, Fisher GA, van de Rijn M, Clarke MF
    N Engl J Med
  21. Maternal use of oral contraceptives and risk of birth defects in Denmark: prospective, nationwide cohort study.
    Charlton BM, Mølgaard-Nielsen D, Svanström H, Wohlfahrt J, Pasternak B, Melbye M
    BMJ
  22. The Questions We Cannot Answer.
    Waliany S
    Acad Med
  23. Lymphoid Hyperplasia of the Appendix: A Potential Pitfall in the Sonographic Diagnosis of Appendicitis.
    Xu Y, Jeffrey RB, DiMaio MA, Olcott EW
    AJR Am J Roentgenol
  24. Enrollment Yield and Reasons for Screen Failure in a Large Prehospital Stroke Trial.
    Kim DH, Saver JL, Starkman S, Liebeskind DS, Ali LK, Restrepo L, Kim-Tenser M, Valdes-Sueiras M, Eckstein M, Pratt F, Stratton S, Hamilton S, Conwit R, Sanossian N, Field Administration of Stroke Therapy–Magnesium (FAST-MAG) Trial Nurse-Coordinators and Investigators
    Stroke
  25. Coffee and caffeine consumption and the risk of hypertension in postmenopausal women.
    Rhee JJ, Qin F, Hedlin HK, Chang TI, Bird CE, Zaslavsky O, Manson JE, Stefanick ML, Winkelmayer WC
    Am J Clin Nutr
  26. The Children's Hepatic tumors International Collaboration (CHIC): Novel global rare tumor database yields new prognostic factors in hepatoblastoma and becomes a research model.
    Czauderna P, Haeberle B, Hiyama E, Rangaswami A, Krailo M, Maibach R, Rinaldi E, Feng Y, Aronson D, Malogolowkin M, Yoshimura K, Leuschner I, Lopez-Terrada D, Hishiki T, Perilongo G, von Schweinitz D, Schmid I, Watanabe K, Derosa M, Meyers R
    Eur J Cancer
  27. Survival in familial and non-familial breast cancer by age and stage at diagnosis.
    Kharazmi E, Försti A, Sundquist K, Hemminki K
    Eur J Cancer
  28. Exploring the Relationship Between Stereotype Perception and Residents' Well-Being.
    Salles A, Mueller CM, Cohen GL
    J Am Coll Surg
  29. Where Do We Stand With Aspirin for the Prevention of Colorectal Cancer? The USPSTF Recommendations.
    Chan AT, Ladabaum U
    Gastroenterology
  30. An active site rearrangement within the Tetrahymena group I ribozyme releases nonproductive interactions and allows formation of catalytic interactions.
    Sengupta RN, Van Schie SN, Giambaşu G, Dai Q, Yesselman JD, York D, Piccirilli JA, Herschlag D
    RNA
  31. Systematic Motorcycle Management and Health Care Delivery: A Field Trial.
    Mehta KM, Rerolle F, Rammohan SV, Albohm DC, Muwowo G, Moseson H, Sept L, Lee HL, Bendavid E
    Am J Public Health
  32. Sociodemographic Predictors of Vaccination Exemptions on the Basis of Personal Belief in California.
    Yang YT, Delamater PL, Leslie TF, Mello MM
    Am J Public Health
  33. Risk of Recurrent Arterial Ischemic Stroke in Childhood: A Prospective International Study.
    Fullerton HJ, Wintermark M, Hills NK, Dowling MM, Tan M, Rafay MF, Elkind MS, Barkovich AJ, deVeber GA, VIPS Investigators
    Stroke
  34. Surgeons' Leadership Styles and Team Behavior in the Operating Room.
    Hu YY, Parker SH, Lipsitz SR, Arriaga AF, Peyre SE, Corso KA, Roth EM, Yule SJ, Greenberg CC
    J Am Coll Surg
  35. Blood Volume Monitoring to Assist Fluid Management in Hemodialysis Patients.
    Hussein WF, Arramreddy R, Sun SJ, Doss-McQuitty S, Schiller B
    Am J Kidney Dis
  36. Apolipoprotein E Mediates Evasion From Hepatitis C Virus Neutralizing Antibodies.
    Fauvelle C, Felmlee DJ, Crouchet E, Lee J, Heydmann L, Lefèvre M, Magri A, Hiet MS, Fofana I, Habersetzer F, Foung SK, Milne R, Patel AH, Vercauteren K, Meuleman P, Zeisel MB, Bartenschlager R, Schuster C, Baumert TF
    Gastroenterology
  37. Oncologic Outcomes After Transoral Robotic Surgery: A Multi-institutional Study.
    de Almeida JR, Li R, Magnuson JS, Smith RV, Moore E, Lawson G, Remacle M, Ganly I, Kraus DH, Teng MS, Miles BA, White H, Duvvuri U, Ferris RL, Mehta V, Kiyosaki K, Damrose EJ, Wang SJ, Kupferman ME, Koh YW, Genden EM, Holsinger FC
    JAMA Otolaryngol Head Neck Surg
  38. Pathobiology of Helicobacter pylori-Induced Gastric Cancer.
    Amieva M, Peek RM
    Gastroenterology
  39. Ambrisentan and Tadalafil Up-front Combination Therapy in Scleroderma-associated Pulmonary Arterial Hypertension.
    Hassoun PM, Zamanian RT, Damico R, Lechtzin N, Khair R, Kolb TM, Tedford RJ, Hulme OL, Housten T, Pisanello C, Sato T, Pullins EH, Corona-Villalobos CP, Zimmerman SL, Gashouta MA, Minai OA, Torres F, Girgis RE, Chin K, Mathai SC
    Am J Respir Crit Care Med
  40. Total Exposure Study Analysis consortium: a cross-sectional study of tobacco exposures.
    Bergen AW, Krasnow R, Javitz HS, Swan GE, Li MD, Baurley JW, Chen X, Murrelle L, Zedler B
    BMC Public Health
  41. Evaluation of the International Prognostic Score (IPS-7) and a Simpler Prognostic Score (IPS-3) for advanced Hodgkin lymphoma in the modern era.
    Diefenbach CS, Li H, Hong F, Gordon LI, Fisher RI, Bartlett NL, Crump M, Gascoyne RD, Wagner H, Stiff PJ, Cheson BD, Stewart DA, Kahl BS, Friedberg JW, Blum KA, Habermann TM, Tuscano JM, Hoppe RT, Horning SJ, Advani RH
    Br J Haematol
  42. Smartphone apps for snoring.
    Camacho M, Robertson M, Abdullatif J, Certal V, Kram YA, Ruoff CM, Brietzke SE, Capasso R
    J Laryngol Otol
  43. Association of worker characteristics and early reimbursement for physical therapy, chiropractic and opioid prescriptions with workers' compensation claim duration, for cases of acute low back pain: an observational cohort study.
    Busse JW, Ebrahim S, Heels-Ansdell D, Wang L, Couban R, Walter SD
    BMJ Open
  44. Shockingly Early: Chromatin-Mediated Loss of the Heat Shock Response.
    Booth LN, Brunet A
    Mol Cell
  45. Fabrication of healthy and disease-mimicking retinal phantoms with tapered foveal pits for optical coherence tomography.
    Lee GC, Smith GT, Agrawal M, Leng T, Ellerbee AK
    J Biomed Opt
  46. Chemodetection and Destruction of Host Urea Allows Helicobacter pylori to Locate the Epithelium.
    Huang JY, Sweeney EG, Sigal M, Zhang HC, Remington SJ, Cantrell MA, Kuo CJ, Guillemin K, Amieva MR
    Cell Host Microbe
  47. A Plea to Reassess the Role of United States Medical Licensing Examination Step 1 Scores in Residency Selection.
    Prober CG, Kolars JC, First LR, Melnick DE
    Acad Med
  48. Human V4 and ventral occipital retinotopic maps.
    Winawer J, Witthoft N
    Vis Neurosci
  49. Salvage Conservation Laryngeal Surgery After Radiation Therapy Failure.
    Chen MM, Holsinger FC, Laccourreye O
    Otolaryngol Clin North Am
  50. Practical dose point-based methods to characterize dose distribution in a stationary elliptical body phantom for a cone-beam C-arm CT system.
    Choi JH, Constantin D, Ganguly A, Girard E, Morin RL, Dixon RL, Fahrig R
    Med Phys
  51. Imaging surveillance and survival for surgically resected non-small-cell lung cancer.
    Backhus LM, Farjah F, Liang CK, He H, Varghese TK, Au DH, Flum DR, Zeliadt SB
    J Surg Res
  52. Treatment Approaches to Locally Advanced Pancreatic Adenocarcinoma.
    Pollom EL, Koong AC, Ko AH
    Hematol Oncol Clin North Am
  53. Supporting Medical Students' Pursuit of Longitudinal Patient Experiences: Piloting an Innovative Visit Notification Tool at the Massachusetts General Hospital.
    Elmore SN, Kopecky KE, Jennings K, de Moya M, Beresin G, Wright DE
    Acad Med
  54. Synthetic biology: Ribosomal ties that bind.
    Puglisi JD
    Nature
  55. Localized Ambient Solidity Separation Algorithm Based Computer User Segmentation.
    Sun X, Zhang T, Chai Y, Liu Y
    Comput Intell Neurosci
  56. Management of Intercarpal Ligament Injuries Associated with Distal Radius Fractures.
    Desai MJ, Kamal RN, Richard MJ
    Hand Clin
  57. Tamibarotene in patients with acute promyelocytic leukaemia relapsing after treatment with all-trans retinoic acid and arsenic trioxide.
    Sanford D, Lo-Coco F, Sanz MA, Di Bona E, Coutre S, Altman JK, Wetzler M, Allen SL, Ravandi F, Kantarjian H, Cortes JE
    Br J Haematol
  58. In an Age of Open Access to Research Policies: Physician and Public Health NGO Staff Research Use and Policy Awareness.
    Moorhead LL, Holzmeyer C, Maggio LA, Steinberg RM, Willinsky J
    PLoS One
  59. Musical Preferences are Linked to Cognitive Styles.
    Greenberg DM, Baron-Cohen S, Stillwell DJ, Kosinski M, Rentfrow PJ
    PLoS One
  60. Challenges to Learning Evidence-Based Medicine and Educational Approaches to Meet These Challenges: A Qualitative Study of Selected EBM Curricula in U.S. and Canadian Medical Schools.
    Maggio LA, ten Cate O, Chen HC, Irby DM, O'Brien BC
    Acad Med
  61. Very long haplotype tracts characterized at high resolution from HLA homozygous cell lines.
    Norman PJ, Norberg SJ, Nemat-Gorgani N, Royce T, Hollenbach JA, Shults Won M, Guethlein LA, Gunderson KL, Ronaghi M, Parham P
    Immunogenetics
  62. Habitat Heterogeneity Affects Plant and Arthropod Species Diversity and Turnover in Traditional Cornfields.
    Martínez E, Rös M, Bonilla MA, Dirzo R
    PLoS One
  63. Monitoring Cerebrovascular Reactivity through the Use of Arterial Spin Labeling in Patients with Moyamoya Disease.
    Yun TJ, Paeng JC, Sohn CH, Kim JE, Kang HS, Yoon BW, Choi SH, Kim JH, Lee HY, Han MH, Zaharchuk G
    Radiology
  64. Genetic Variants Associated with Port-Wine Stains.
    Frigerio A, Wright K, Wooderchak-Donahue W, Tan OT, Margraf R, Stevenson DA, Grimmer JF, Bayrak-Toydemir P
    PLoS One
  65. Elevated pretransplant pulmonary vascular resistance index does not predict mortality after isolated orthotopic heart transplantation in children: A retrospective analysis of the UNOS database.
    Chiu P, Schaffer JM, Sheikh AY, Ha R, Reinhartz O, Mainwaring R, Reitz BA
    Pediatr Transplant
  66. Evaluation of ERG and SPINK1 by Immunohistochemical Staining and Clinicopathological Outcomes in a Multi-Institutional Radical Prostatectomy Cohort of 1067 Patients.
    Brooks JD, Wei W, Hawley S, Auman H, Newcomb L, Boyer H, Fazli L, Simko J, Hurtado-Coll A, Troyer DA, Carroll PR, Gleave M, Lance R, Lin DW, Nelson PS, Thompson IM, True LD, Feng Z, McKenney JK
    PLoS One
  67. Selective Pressures Explain Differences in Flower Color among Gentiana lutea Populations.
    Sobral M, Veiga T, Domínguez P, Guitián JA, Guitián P, Guitián JM
    PLoS One
  68. The Relationship Between Industry and Pain Societies, Part 1: Demystification and Legitimization of Continuing Medical Education.
    Darnall BD, Schatman ME
    Pain Med
  69. Synthetic RNAi triggers and their use in chronic hepatitis B therapies with curative intent.
    Gish RG, Yuen MF, Chan HL, Given BD, Lai CL, Locarnini SA, Lau JY, Wooddell CI, Schluep T, Lewis DL
    Antiviral Res
  70. Chronic hepatitis B: Virology, natural history, current management and a glimpse at future opportunities.
    Gish RG, Given BD, Lai CL, Locarnini SA, Lau JY, Lewis DL, Schluep T
    Antiviral Res
  71. In vitro immunomodulation for enhancing T cell-based diagnosis of Mycobacterium tuberculosis infection.
    Slater M, Tran MC, Platt L, Luu LT, Phan HT, Pham PT, Do TB, Nguyen HT, Gaur RL, Parsonnet J, Cattamanchi A, Luo R, Nahid P, Banaei N
    Diagn Microbiol Infect Dis
  72. Tripeptidyl Peptidase II Mediates Levels of Nuclear Phosphorylated ERK1 and ERK2.
    Wiemhoefer A, Stargardt A, van der Linden WA, Renner MC, van Kesteren RE, Stap J, Raspe MA, Tomkinson B, Kessels HW, Ovaa H, Overkleeft HS, Florea B, Reits EA
    Mol Cell Proteomics
  73. Long-term Stability of Urinary Biomarkers of Acute Kidney Injury in Children.
    Schuh MP, Nehus E, Ma Q, Haffner C, Bennett M, Krawczeski CD, Devarajan P
    Am J Kidney Dis
  74. Nonlinear Effects of Noxious Thermal Stimulation and Working Memory Demands on Subjective Pain Perception.
    Sturgeon JA, Tieu MM, Jastrzab LE, McCue R, Gandhi V, Mackey SC
    Pain Med
  75. Associations Between Ankle-Brachial Index and Cognitive Function: Results From the Lifestyle Interventions and Independence for Elders Trial.
    Espeland MA, Newman AB, Sink K, Gill TM, King AC, Miller ME, Guralnik J, Katula J, Church T, Manini T, Reid KF, McDermott MM, LIFE Study Group
    J Am Med Dir Assoc
  76. Risk Factors for Prolonged Postpartum Length of Stay Following Cesarean Delivery.
    Blumenfeld YJ, El-Sayed YY, Lyell DJ, Nelson LM, Butwick AJ
    Am J Perinatol
  77. Pediatric Patient and Hospital Characteristics Associated With Treatment of Peritonsillar Abscess and Peritonsillar Cellulitis.
    Nguyen T, Haberland CA, Hernandez-Boussard T
    Clin Pediatr (Phila)
  78. Computational modeling of chemo-bio-mechanical coupling: a systems-biology approach toward wound healing.
    Buganza Tepole A, Kuhl E
    Comput Methods Biomech Biomed Engin
  79. How have fisheries affected parasite communities?
    Wood CL, Lafferty KD
    Parasitology

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