Recent Stanford Publications in PubMed

  1. Mass Cytometric Analysis of HIV Entry, Replication, and Remodeling in Tissue CD4+ T Cells.
    Cavrois M, Banerjee T, Mukherjee G, Raman N, Hussien R, Rodriguez BA, Vasquez J, Spitzer MH, Lazarus NH, Jones JJ, Ochsenbauer C, McCune JM, Butcher EC, Arvin AM, Sen N, Greene WC, Roan NR
    Cell Rep
  2. Glycolytic Enzymes Coalesce in G Bodies under Hypoxic Stress.
    Jin M, Fuller GG, Han T, Yao Y, Alessi AF, Freeberg MA, Roach NP, Moresco JJ, Karnovsky A, Baba M, Yates JR, Gitler AD, Inoki K, Klionsky DJ, Kim JK
    Cell Rep
  3. DDX6 Represses Aberrant Activation of Interferon-Stimulated Genes.
    Lumb JH, Li Q, Popov LM, Ding S, Keith MT, Merrill BD, Greenberg HB, Li JB, Carette JE
    Cell Rep
  4. Association Between Preoperative Hemoglobin A1c Levels, Postoperative Hyperglycemia, and Readmissions Following Gastrointestinal Surgery.
    Jones CE, Graham LA, Morris MS, Richman JS, Hollis RH, Wahl TS, Copeland LA, Burns EA, Itani KM, Hawn MT
    JAMA Surg
  5. OpenMM 7: Rapid development of high performance algorithms for molecular dynamics.
    Eastman P, Swails J, Chodera JD, McGibbon RT, Zhao Y, Beauchamp KA, Wang LP, Simmonett AC, Harrigan MP, Stern CD, Wiewiora RP, Brooks BR, Pande VS
    PLoS Comput Biol
  6. Discovery of novel brain permeable and G protein-biased beta-1 adrenergic receptor partial agonists for the treatment of neurocognitive disorders.
    Yi B, Jahangir A, Evans AK, Briggs D, Ravina K, Ernest J, Farimani AB, Sun W, Rajadas J, Green M, Feinberg EN, Pande VS, Shamloo M
    PLoS One
  7. Tumor Evolution, Heterogeneity, and Therapy for Our Patients With Advanced Cancer: How Far Have We Come?
    El-Deiry WS, Taylor B, Neal JW
    Am Soc Clin Oncol Educ Book
  8. Unexpected Gains: Being Overweight Buffers Asian Americans From Prejudice Against Foreigners.
    Handron C, Kirby TA, Wang J, Matskewich HE, Cheryan S
    Psychol Sci
  9. Noninvasive ventilation for patients in acute respiratory distress: an update [digest].
    Joshi N, Estes MK, Shipley K, Lee HD, Zaurova M
    Emerg Med Pract
  10. Is the boss watching?
    Etkin A
    Nat Neurosci
  11. Engineering magnetism at functional oxides interfaces: Manganites and Beyond.
    Yi D, Lu N, Chen X, Shen S, Yu P
    J Phys Condens Matter
  12. Fat-based registration of breast dynamic contrast enhanced water images.
    Srinivasan S, Hargreaves BA, Daniel BL
    Magn Reson Med
  13. CD47 blockade enhances therapeutic activity of TCR mimic antibodies to ultra low density cancer epitopes.
    Mathias MD, Sockolosky JT, Chang AY, Tan KS, Liu C, Garcia KC, Scheinberg DA
  14. Optimal Use of Diabetes Devices: Clinician Perspectives on Barriers and Adherence to Device Use.
    Tanenbaum ML, Adams RN, Hanes SJ, Barley RC, Miller KM, Mulvaney SA, Hood KK
    J Diabetes Sci Technol
  15. Benchmark problems for numerical treatment of backflow at open boundaries.
    Bertoglio C, Caiazzo A, Bazilevs Y, Braack M, Esmaily M, Gravemeier V, Marsden A, Pironneau O, Vignon-Clementel IE, Wall WA
    Int J Numer Method Biomed Eng
  16. Liver Transplantation for Nonalcoholic Steatohepatitis in the US: Temporal Trends and Outcomes.
    Cholankeril G, Wong RJ, Hu M, Perumpail RB, Yoo ER, Puri P, Younossi ZM, Harrison SA, Ahmed A
    Dig Dis Sci
  17. Perioperative and Long-Term Outcome for Intrahepatic Cholangiocarcinoma: Impact of Major Versus Minor Hepatectomy.
    Zhang XF, Bagante F, Chakedis J, Moris D, Beal EW, Weiss M, Popescu I, Marques HP, Aldrighetti L, Maithel SK, Pulitano C, Bauer TW, Shen F, Poultsides GA, Soubrane O, Martel G, Groot Koerkamp B, Guglielmi A, Itaru E, Pawlik TM
    J Gastrointest Surg
  18. Neuroendocrine Liver Metastasis: Prognostic Implications of Primary Tumor Site on Patients Undergoing Curative Intent Liver Surgery.
    Spolverato G, Bagante F, Aldrighetti L, Poultsides G, Bauer TW, Field RC, Marques HP, Weiss M, Maithel SK, Pawlik TM
    J Gastrointest Surg
  19. Frequency of acute longus colli tendinitis on CT examinations.
    Boardman J, Kanal E, Aldred P, Boonsiri J, Nworgu C, Zhang F
    Emerg Radiol
  20. Efficacy and safety of midostaurin in patients with advanced systemic mastocytosis: 10-year median follow-up of a phase II trial.
    DeAngelo DJ, George TI, Linder A, Langford C, Perkins C, Ma J, Westervelt P, Merker JD, Berube C, Coutre S, Liedtke M, Medeiros B, Sternberg D, Dutreix C, Ruffie PA, Corless C, Graubert TJ, Gotlib J
  21. Paracrine Effects of the Pluripotent Stem Cell-Derived Cardiac Myocytes Salvage the Injured Myocardium.
    Tachibana A, Santoso MR, Mahmoudi M, Shukla P, Wang L, Bennett M, Goldstone AB, Wang M, Fukushi M, Ebert A, Woo YJ, Rulifson E, Yang PC
    Circ Res
  22. Cell autonomous sonic hedgehog signaling contributes to maintenance of retinal endothelial tight junctions.
    Diaz-Coranguez M, Chao DL, Salero EL, Goldberg JL, Antonetti DA
    Exp Eye Res
  23. Editorial overview: Virus structure and functions.
    Jardetzky T, Kuhn R, Lamb R
    Curr Opin Virol
  24. Presence of Even a Small Ground-Glass Component in Lung Adenocarcinoma Predicts Better Survival.
    Berry MF, Gao R, Kunder CA, Backhus L, Khuong A, Kadoch M, Leung A, Shrager J
    Clin Lung Cancer
  25. The lysosomal protein cathepsin L is a progranulin protease.
    Lee CW, Stankowski JN, Chew J, Cook CN, Lam YW, Almeida S, Carlomagno Y, Lau KF, Prudencio M, Gao FB, Bogyo M, Dickson DW, Petrucelli L
    Mol Neurodegener
  26. Ranking and characterization of established BMI and lipid associated loci as candidates for gene-environment interactions.
    Shungin D, Deng WQ, Varga TV, Luan J, Mihailov E, Metspalu A, GIANT Consortium, Morris AP, Forouhi NG, Lindgren C, Magnusson PKE, Pedersen NL, Hallmans G, Chu AY, Justice AE, Graff M, Winkler TW, Rose LM, Langenberg C, Cupples LA, Ridker PM, Wareham NJ, Ong KK, Loos RJF, Chasman DI, Ingelsson E, Kilpeläinen TO, Scott RA, Mägi R, Paré G, Franks PW
    PLoS Genet
  27. Quantitative proteomics: challenges and opportunities in basic and applied research.
    Schubert OT, Röst HL, Collins BC, Rosenberger G, Aebersold R
    Nat Protoc
  28. The Retromer Supports AMPA Receptor Trafficking During LTP.
    Temkin P, Morishita W, Goswami D, Arendt K, Chen L, Malenka R
  29. Theta Oscillations Rapidly Convey Odor-Specific Content in Human Piriform Cortex.
    Jiang H, Schuele S, Rosenow J, Zelano C, Parvizi J, Tao JX, Wu S, Gottfried JA
  30. Reporting and Guidelines in Propensity Score Analysis: A Systematic Review of Cancer and Cancer Surgical Studies.
    Yao XI, Wang X, Speicher PJ, Hwang ES, Cheng P, Harpole DH, Berry MF, Schrag D, Pang HH
    J Natl Cancer Inst
  31. Studying Brain Circuit Function with Dynamic Causal Modeling for Optogenetic fMRI.
    Bernal-Casas D, Lee HJ, Weitz AJ, Lee JH
  32. Is Follow-Up Testing with the FilmArray Gastrointestinal Multiplex PCR Panel Necessary?
    Park S, Hitchcock MM, Gomez CA, Banaei N
    J Clin Microbiol
  33. Dynamic Interaction between Reinforcement Learning and Attention in Multidimensional Environments.
    Leong YC, Radulescu A, Daniel R, DeWoskin V, Niv Y
  34. Calibration of BK Virus Nucleic Acid Amplification Testing to the 1st WHO International Standard for BK Virus.
    Tan SK, Milligan S, Sahoo MK, Taylor N, Pinsky BA
    J Clin Microbiol
  35. The Prenylated Proteome of Plasmodium falciparum Reveals Pathogen-specific Prenylation Activity and Drug Mechanism-of-action.
    Gisselberg JE, Zhang L, Elias JE, Yeh E
    Mol Cell Proteomics
  36. Linking Electrical Stimulation of Human Primary Visual Cortex, Size of Affected Cortical Area, Neuronal Responses, and Subjective Experience.
    Winawer J, Parvizi J
  37. Immunological and infectious risk factors for lung cancer in US veterans with HIV: a longitudinal cohort study.
    Sigel K, Wisnivesky J, Crothers K, Gordon K, Brown ST, Rimland D, Rodriguez-Barradas MC, Gibert C, Goetz MB, Bedimo R, Park LS, Dubrow R
    Lancet HIV
  38. Tapping the Brakes: Cellular and Synaptic Mechanisms that Regulate Thalamic Oscillations.
    Fogerson PM, Huguenard JR
  39. Methodologic Considerations in the Application of Next-Generation Sequencing of Human TRB Repertoires for Clinical Use.
    Xu L, You X, Zheng P, Zhang BM, Gupta PK, Lavori P, Meyer E, Zehnder JL
    J Mol Diagn
  40. Mapping the Fetomaternal Peripheral Immune System at Term Pregnancy.
    Fragiadakis GK, Baca QJ, Gherardini PF, Ganio EA, Gaudilliere DK, Tingle M, Lancero HL, McNeil LS, Spitzer MH, Wong RJ, Shaw GM, Darmstadt GL, Sylvester KG, Winn VD, Carvalho B, Lewis DB, Stevenson DK, Nolan GP, Aghaeepour N, Angst MS, Gaudilliere BL
    J Immunol
  41. The cognitive developmental profile associated with fragile X syndrome: A longitudinal investigation of cognitive strengths and weaknesses through childhood and adolescence.
    Quintin EM, Jo B, Hall SS, Bruno JL, Chromik LC, Raman MM, Lightbody AA, Martin A, Reiss AL
    Dev Psychopathol
  42. Methane Leaks from Natural Gas Systems Follow Extreme Distributions.
    Brandt AR, Heath GA, Cooley D
    Environ Sci Technol
  43. Risk of ischemic stroke varies by ethnicity in patients with atrial fibrillation: A Swedish national cohort study.
    Ji J, Sundquist J, Sundquist K
    Eur J Intern Med
  44. New insights into discrepancies between self-reported and accelerometer-measured moderate to vigorous physical activity among women - the mPED trial.
    Fukuoka Y, Haskell W, Vittinghoff E
    BMC Public Health
  45. Alkylator-Induced and Patient-Derived Xenograft Mouse Models of Therapy-Related Myeloid Neoplasms Model Clinical Disease and Suggest the Presence of Multiple Cell Subpopulations with Leukemia Stem Cell Activity.
    Jonas BA, Johnson C, Gratzinger D, Majeti R
    PLoS One
  46. Bariatric Surgery Outcomes in US Accredited vs Non-Accredited Centers: A Systematic Review.
    Azagury D, Morton JM
    J Am Coll Surg
  47. Comorbid Analysis of Genes Associated with Autism Spectrum Disorders Reveals Differential Evolutionary Constraints.
    David MM, Enard D, Ozturk A, Daniels J, Jung JY, Diaz-Beltran L, Wall DP
    PLoS One
  48. Effects of Magnesium Supplementation on Blood Pressure: A Meta-Analysis of Randomized Double-Blind Placebo-Controlled Trials.
    Zhang X, Li Y, Del Gobbo LC, Rosanoff A, Wang J, Zhang W, Song Y
  49. Habenular Neurogenesis in Zebrafish Is Regulated by a Hedgehog, Pax6 Proneural Gene Cascade.
    Halluin C, Madelaine R, Naye F, Peers B, Roussigné M, Blader P
    PLoS One
  50. Is Butter Back? A Systematic Review and Meta-Analysis of Butter Consumption and Risk of Cardiovascular Disease, Diabetes, and Total Mortality.
    Pimpin L, Wu JH, Haskelberg H, Del Gobbo L, Mozaffarian D
    PLoS One
  51. Prehypertension During Normotensive Pregnancy and Postpartum Clustering of Cardiometabolic Risk Factors: A Prospective Cohort Study.
    Lei Q, Zhou X, Zhou YH, Mai CY, Hou MM, Lv LJ, Duan DM, Wen JY, Lin XH, Wang PP, Ling XB, Li YM, Niu JM
  52. Predialysis volume overload and patient-reported sleep duration and quality in patients receiving hemodialysis.
    Abreo AP, Dalrymple LS, Chertow GM, Kaysen GA, Herzog CA, Johansen KL
    Hemodial Int
  53. Familial Transmission of Hospital-Treated Varicose Veins in Adoptees: A Swedish Family Study.
    Kohno K, Niihara H, Li X, Hamano T, Nabika T, Shiwaku K, Isomura M, Morita E, Sundquist K, Zöller B
    J Am Coll Surg
  54. Age- and Tumor Subtype-Specific Breast Cancer Risk Estimates for CHEK2*1100delC Carriers.
    Schmidt MK, Hogervorst F, van Hien R, Cornelissen S, Broeks A, Adank MA, Meijers H, Waisfisz Q, Hollestelle A, Schutte M, van den Ouweland A, Hooning M, Andrulis IL, Anton-Culver H, Antonenkova NN, Antoniou AC, Arndt V, Bermisheva M, Bogdanova NV, Bolla MK, Brauch H, Brenner H, Brüning T, Burwinkel B, Chang-Claude J, Chenevix-Trench G, Couch FJ, Cox A, Cross SS, Czene K, Dunning AM, Fasching PA, Figueroa J, Fletcher O, Flyger H, Galle E, García-Closas M, Giles GG, Haeberle L, Hall P, Hillemanns P, Hopper JL, Jakubowska A, John EM, Jones M, Khusnutdinova E, Knight JA, Kosma VM, Kristensen V, Lee A, Lindblom A, Lubinski J, Mannermaa A, Margolin S, Meindl A, Milne RL, Muranen TA, Newcomb PA, Offit K, Park-Simon TW, Peto J, Pharoah PD, Robson M, Rudolph A, Sawyer EJ, Schmutzler RK, Seynaeve C, Soens J, Southey MC, Spurdle AB, Surowy H, Swerdlow A, Tollenaar RA, Tomlinson I, Trentham-Dietz A, Vachon C, Wang Q, Whittemore AS, Ziogas A, van der Kolk L, Nevanlinna H, Dörk T, Bojesen S, Easton DF
    J Clin Oncol
  55. Risk of second primary cancers after malignant mesothelioma and vice versa.
    Chen T, Kharazmi E, Lou J, Zhang X, Sundquist K, Hemminki K
    Cancer Lett
  56. Imaging of cerebrovascular reserve and oxygenation in Moyamoya disease.
    Ni WW, Christen T, Rosenberg J, Zun Z, Moseley ME, Zaharchuk G
    J Cereb Blood Flow Metab
  57. Exercise intolerance in pulmonary hypertension: mechanism, evaluation and clinical implications.
    Babu AS, Arena R, Myers J, Padmakumar R, Maiya AG, Cahalin LP, Waxman AB, Lavie CJ
    Expert Rev Respir Med
  58. Motion-Correction Enabled Ultra-High Resolution In-Vivo 7T-MRI of the Brain.
    Federau C, Gallichan D
    PLoS One
  59. Tumor microenvironment: The culprit for ovarian cancer metastasis?
    Luo Z, Wang Q, Lau WB, Lau B, Xu L, Zhao L, Yang H, Feng M, Xuan Y, Yang Y, Lei L, Wang C, Yi T, Zhao X, Wei Y, Zhou S
    Cancer Lett
  60. PD-L1 and PD-L2 Genetic Alterations Define Classical Hodgkin Lymphoma and Predict Outcome.
    Roemer MG, Advani RH, Ligon AH, Natkunam Y, Redd RA, Homer H, Connelly CF, Sun HH, Daadi SE, Freeman GJ, Armand P, Chapuy B, de Jong D, Hoppe RT, Neuberg DS, Rodig SJ, Shipp MA
    J Clin Oncol
  61. Long non-coding RNA regulation of gene expression during differentiation.
    Lopez-Pajares V
    Pflugers Arch
  62. The role of Fas-associated phosphatase 1 in leukemia stem cell persistence during tyrosine kinase inhibitor treatment of chronic myeloid leukemia.
    Huang W, Luan CH, Hjort EE, Bei L, Mishra R, Sakamoto KM, Platanias LC, Eklund EA
  63. The Italian genome reflects the history of Europe and the Mediterranean basin.
    Fiorito G, Di Gaetano C, Guarrera S, Rosa F, Feldman MW, Piazza A, Matullo G
    Eur J Hum Genet

Access restricted to Stanford community

A point-of-care clinical information resource containing succinct and aggressively updated clinical topic reviews.

Provides fulltext access to Lane's resources.

Includes the MEDLINE database, which contains coverage of over 5000 journals and more than 25 million citations for biomedical articles, including, but not limited to, clinical trials, systematic reviews, case reports, and clinical practice guidelines.

Lane RSS feeds (Really Simple Syndication)A medical search engine provides access to 9,000 medical and procedural videos, 1,000 books and over.All online issues of the Journal of the American Medical Association.Nature, the international weekly journal of science.New England Journal of Medicine.Searchable databasesLane Library's DocXpress service obtains article and book chapter PDFs as well as print book loans from other libraries at no cost to School of Medicine affiliated users as well as scans PDFs of articles or book chapters from Lane's print collection for a small fee.
Derived from Current Medical Diagnosis & Treatment, AccessMedicine's Quick Medical Diagnosis & Treatment provides topic reviews with key diagnostic and treatment features for more than 500 diseases.

A repository of medical knowledge from internal medicine, cardiology, genetics, pharmacy, diagnosis and management, basic sciences, patient care, and more.

Continuously expanding, all databases in the repository contain the latest editions of selected medical titles.

MicroMedex: Premier pharmaceutical information source containing multiple databases and drug reference tools. Of particular value is DRUGDEX Evaluations, one of the most comprehensive drug sources available.DynaMed Plus is a clinical information resource used to answer questions quickly at the point-of-care. Easy-to-interpret Levels of Evidence help clinicians rapidly determine the quality of the available evidence.

Biomedical and pharmacological abstracting and indexing database of published literature, by Elsevier. Embase® contains over 32 million records from over 8,500 currently published journals (1947-present) and is noteworthy for its extensive coverage of the international pharmaceutical and alternative/complementary medicine literature.

Scopus is the largest abstract and citation database of peer-reviewed literature: scientific journals, books and conference proceedings.A drug information resource containing: American Hospital Formulary System (AHFS), drug formulary for Lucile Packard Children's Hospital (LPCH) and Stanford Hospital & Clinics (SHC), Lexi-Drugs (adverse reactions, dosage and administration, mechanism of action, storage, use, and administration information), Lexi-Calc, Lexi-ID, Lexi-I.V. Compatibility (King Guide), Lexi-Interact, and Lexi-PALS.Cumulative Index to Nursing and Allied Health Literature (CINAHL) contains coverage of nursing and allied health literature.A knowledge database that provides access to topic reviews based on over 6000 clinically relevant articles. The evidence-based content, updated regularly, provides the latest practice guidelines in 59 medical specialties.Provides critical assessments of systematic reviews compiled from a variety of medical journals.Selects from the biomedical literature original studies and systematic reviews that are immediately clinically relevant and then summarizes these articles in an enhanced abstract with expert commentary.

Multidisciplinary coverage of over 10,000 high-impact journals in the sciences, social sciences, and arts and humanities, as well as international proceedings coverage for over 120,000 conferences.

Includes cited reference searching, citation maps, and an analyze tool.

Features systematic reviews that summarize the effects of interventions and makes a determination whether the intervention is efficacious or not.

Cochrane reviews are created through a strict process of compiling and analyzing data from multiple randomized control trials to ensure comprehensiveness and reliability.

Provides systematic coverage of the psychological literature from the 1800s to the present through articles, book chapters and dissertations.BMJ Clinical Evidence. A clinical information tool built around systematic reviews summarizing the current state of knowledge about prevention and treatment of clinical conditions.PIER (Physicians' Information and Education Resource) is a Web-based decision-support tool designed for rapid point-of-care delivery of up-to-date, evidence-based guidance for primary care physicians.Cochrane Central Register of Controlled Trials (CENTRAL) provides access to 300,000 controlled trials that have been identified the Cochrane Collaboration.Provides drug information targeted for patients.A continually updating drug monograph.The National Guideline Clearinghouse (NGC): A comprehensive database of evidence-based clinical practice guidelines and related documents.MedlinePlus: A repository of health information from the National Library of Medicine. Links are from trusted sites. No advertising, no endorsement of commercial companies or productsLPCH CareNotes via MicroMedex: Patient education handouts customized by LPCH clinical staffMicromedex Lab Advisor: Evidence based laboratory test informationA drug database organized by generic name, trade name and drug class.LPCH / Stanford Hospital Formulary.A goldmine of trusted consumer health information from the world's largest medical library.A trusted source of expert advice for and about kids, providing the information necessary to help patients and parents understand their unique needs.Provides patient handouts from the American Academy of Family Physician.Access to the Stanford Health Library for patients.Lane provides access to over 5,000 eBooks many of which provide helpful background material that will prepare you to better tackle primary literature.

Largest, broadest eBook package; covers all sciences, as well as technology (including software), medicine, and humanities.

In addition to covering Wiley and Springer, MyiLibrary is also the only provider for Oxford and Cambridge University Press titles. No seat restrictions.

A collection of biomedical books that can be searched directly by concept, and linked to terms in PubMed abstracts.

A web-based, decision support system for infectious diseases, epidemiology, microbiology and antimicrobial chemotherapy. The database, updated weekly, currently includes 337 diseases, 224 countries, 1,147 microbial taxa and 306 antibacterial (-fungal, -parasitic, -viral) agents and vaccines.

Over 10,000 notes outline the status of specific infections within each country.

Stanford Medicine

Lane Medical Library