Databases

T

  • [collaboration between the Carnegie Institution of Washington, Department of Plant Biology, and the National Center for Genome Resources].
    Maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. Includes the complete genome sequence along with gene structure, gene product information, metabolism, gene expression, DNA and seed stocks, genome maps, genetic and physical markers, publications, and information about the Arabidopsis research community.
  • From: NHGRI
    This alphabetical list includes for each term a pronunciation key, audio commentary, images, and links to related terms.
  • From: NLM
    BrowserFrom: NLM
  • From: TandFonline
    Online platform that hosts eJournals, eBooks, Reference Works and Abstract Databases from the Informa content publishers within the Taylor & Francis Group, including Taylor & Francis, Routledge, Psychology Press, CRC Press and Garland Science.
  • Search engine for Stanford technologies available for licensing.
  • From: Thomson
    Techstreet offers simultaneous access to a custom set of standards in electronic format. Includes automatic updates. Includes ISO standards related to medical devices and health services.
  • Provides databases and tools for identifying transcription factors and their cognate DNA motif that are over-represented in a gene expression dataset.
  • Searches available clinical laboratory tests at Stanford by test name, synonym, and/or order code. Includes procedures for specimen collection and submission, methodology, results reporting, and associated CPT codes.
  • From: Stanf Univ
    Main repository of genomic data from Tetrahymena thermophila.
  • An online journal and ebook service of the Thieme Publishing Group. The ebook package is also called Thieme Clinical Collections.
  • An online library of Thieme books. Includes Thieme eRadiology and RadCases content made available through the Medlantis database.
  • Limited to 19 simultaneous users
    An online collection of Thieme ebooks, procedures, images and ejournals relating to neurosurgery.
  • From: Thieme
    ill. by Markus Voll and Karl Wesker.
    The Thieme Teaching Assistant is a presentation tool featuring all 2,000+ illustrations and clinical images from Atlas of Anatomy by Anne M. Gilroy, Brian R. MacPherson, and Lawrence M. Ross. This platform enables you to enhance students' learning experiences by incorporating dynamic visuals into your lectures and course materials to present complex concepts with clarity.
  • From: NCBI
    TPA sequence is derived or assembled from primary sequence data currently found in the DDBJ/EMBL/GenBank International Nucleotide Sequence Collaboration Databases. Whereas DDBJ/EMBL/GenBank contains primary sequence data and corresponding annotations submitted by the laboratories that did the sequencing, the TPA database contains third-party re-assemblies and/or re-annotations of that primary data.
  • From: NCBI
  • ticTOCs is a table of content aggregator service that facilitates finding journal table of contents available via RSS feeds.
  • Web site seeks to create an archive of historical, social, economical and health information directed towards the education and control of the dangers associated with tobacco usage.
  • From: NLM
    National Library of Medicine.
    A bibliographic database for toxicology, a varied science encompassing many disciplines. Records provide bibliographic information covering the biochemical, pharmacological, physiological, and toxicological effects of drugs and other chemicals.
  • From: NLM
    Specialized Information Services, National Library of Medicine, National Institutes of Health, Department of Health and Human Services.
    TOXMAP is a Geographic Information System (GIS) from the National Library of Medicine (NLM) that uses maps of the United States to help users visually explore data from the EPA's Toxics Release Inventory (TRI). The maps show where these chemicals are released into the air, water, and ground, and identify the releasing facilities, single year releases, and chemical release trends over time.
  • From: NLM
    Provides access to the TOXNET system of databases on toxicology, hazardous chemicals, and related areas.
  • From: NCBI
    TPA sequence is derived or assembled from primary sequence data currently found in the DDBJ/EMBL/GenBank International Nucleotide Sequence Collaboration Databases. Whereas DDBJ/EMBL/GenBank contains primary sequence data and corresponding annotations submitted by the laboratories that did the sequencing, the TPA database contains third-party re-assemblies and/or re-annotations of that primary data.
  • From: NCBI
    Consists of the raw, single-pass, reads of DNA sequence generated from large-scale sequencing projects.
  • Database of promoter elements focused on integrating cis- and trans- regulatory elements in mammals. Compilation is created by extracting known promoters from Genbank, EPD and DBTSS, and predicting additional promoters using FirstEF combined with mRNA/EST information and cross-species comparisons.
  • From: geneXplain
    TRANSFAC contains published data on eukaryotic transcription factors and miRNAs, their experimentally-proven binding sites, and regulated genes. It allows users to identify gene regulators, visualize promoter and regulatory features, identify binding sites, upload users' own sequence and identify the predicted binding sites, upload and compare users' own custom matrix against TRANSFAC's matrix library, analyze ChIP-seq data sets, and analyze transcript-based RNA-seq data sets.
  • From: CDC
    Centers for Disease Contraol and Prevention, National Center for Infectious Diseases.
  • Database of phylogenetic trees of animal genes and their orthologs.
  • compiled by the Community Consortium.
    Searchable database of all open HIV clinical trials in the United States. Search by treatments and medications, medical conditions, state and city. A personalized search option is also available where users can enter information such as age, sex, T-cell count and retrieval a list of trials thery may be qualified for.
  • Jon Brassey; Center for Research Support.
  • From: Clinical Drug Information
    Trissel, Lawrence A.
    This database addresses the compatibility of drugs in intravenous administration.

Medicine, Healthcare, Nursing, Biomedicine, Genetics

Psychology, Psychosocial, Political Topics

Clinical Background

Drug Information

A point-of-care clinical information resource containing succinct and aggressively updated clinical topic reviews.

Provides fulltext access to Lane's resources.

Includes the MEDLINE database, which contains coverage of over 5000 journals and more than 25 million citations for biomedical articles, including, but not limited to, clinical trials, systematic reviews, case reports, and clinical practice guidelines.

Lane RSS feeds (Really Simple Syndication)A medical search engine provides access to 9,000 medical and procedural videos, 1,000 books and over.All online issues of the Journal of the American Medical Association.Nature, the international weekly journal of science.New England Journal of Medicine.Search Ovid databases.Lane Library's DocXpress service obtains article and book chapter PDFs as well as print book loans from other libraries at no cost to School of Medicine affiliated users as well as scans PDFs of articles or book chapters from Lane's print collection for a small fee.
Derived from Current Medical Diagnosis & Treatment, AccessMedicine's Quick Medical Diagnosis & Treatment provides topic reviews with key diagnostic and treatment features for more than 500 diseases.

A repository of medical knowledge from internal medicine, cardiology, genetics, pharmacy, diagnosis and management, basic sciences, patient care, and more.

Continuously expanding, all databases in the repository contain the latest editions of selected medical titles.

MicroMedex: Premier pharmaceutical information source containing multiple databases and drug reference tools. Of particular value is DRUGDEX Evaluations, one of the most comprehensive drug sources available.DynaMed Plus is a clinical information resource used to answer questions quickly at the point-of-care. Easy-to-interpret Levels of Evidence help clinicians rapidly determine the quality of the available evidence. Scopus is the largest abstract and citation database of peer-reviewed literature: scientific journals, books and conference proceedings.A drug information resource containing: American Hospital Formulary System (AHFS), drug formulary for Lucile Packard Children's Hospital (LPCH) and Stanford Hospital & Clinics (SHC), Lexi-Drugs (adverse reactions, dosage and administration, mechanism of action, storage, use, and administration information), Lexi-Calc, Lexi-ID, Lexi-I.V. Compatibility (King Guide), Lexi-Interact, and Lexi-PALS.Cumulative Index to Nursing and Allied Health Literature (CINAHL) contains coverage of nursing and allied health literature.A knowledge database that provides access to topic reviews based on over 6000 clinically relevant articles. The evidence-based content, updated regularly, provides the latest practice guidelines in 59 medical specialties.Provides critical assessments of systematic reviews compiled from a variety of medical journals.Selects from the biomedical literature original studies and systematic reviews that are immediately clinically relevant and then summarizes these articles in an enhanced abstract with expert commentary.

Multidisciplinary coverage of over 10,000 high-impact journals in the sciences, social sciences, and arts and humanities, as well as international proceedings coverage for over 120,000 conferences.

Includes cited reference searching, citation maps, and an analyze tool.

Features systematic reviews that summarize the effects of interventions and makes a determination whether the intervention is efficacious or not.

Cochrane reviews are created through a strict process of compiling and analyzing data from multiple randomized control trials to ensure comprehensiveness and reliability.

Provides systematic coverage of the psychological literature from the 1800s to the present through articles, book chapters and dissertations.BMJ Clinical Evidence. A clinical information tool built around systematic reviews summarizing the current state of knowledge about prevention and treatment of clinical conditions.PIER (Physicians' Information and Education Resource) is a Web-based decision-support tool designed for rapid point-of-care delivery of up-to-date, evidence-based guidance for primary care physicians.Cochrane Central Register of Controlled Trials (CENTRAL) provides access to 300,000 controlled trials that have been identified the Cochrane Collaboration.Provides drug information targeted for patients.A continually updating drug monograph.The National Guideline Clearinghouse (NGC): A comprehensive database of evidence-based clinical practice guidelines and related documents.MedlinePlus: A repository of health information from the National Library of Medicine. Links are from trusted sites. No advertising, no endorsement of commercial companies or productsLPCH CareNotes via MicroMedex: Patient education handouts customized by LPCH clinical staffMicromedex Lab Advisor: Evidence based laboratory test informationA drug database organized by generic name, trade name and drug class.LPCH / Stanford Hospital Formulary.A goldmine of trusted consumer health information from the world's largest medical library.A trusted source of expert advice for and about kids, providing the information necessary to help patients and parents understand their unique needs.Provides patient handouts from the American Academy of Family Physician.Access to the Stanford Health Library for patients.Lane provides access to over 5,000 eBooks many of which provide helpful background material that will prepare you to better tackle primary literature.

Largest, broadest eBook package; covers all sciences, as well as technology (including software), medicine, and humanities.

In addition to covering Wiley and Springer, MyiLibrary is also the only provider for Oxford and Cambridge University Press titles. No seat restrictions.

A collection of biomedical books that can be searched directly by concept, and linked to terms in PubMed abstracts.

A web-based, decision support system for infectious diseases, epidemiology, microbiology and antimicrobial chemotherapy. The database, updated weekly, currently includes 337 diseases, 224 countries, 1,147 microbial taxa and 306 antibacterial (-fungal, -parasitic, -viral) agents and vaccines.

Over 10,000 notes outline the status of specific infections within each country.

VisualDx is a decision support system that allows clinicians to build a patient-specific differential, search by diagnosis, or review medication-related events.

VisualDX Rash Workup
Health education and information about illnesses, diseases and conditions provided by the American Academy of Family Physicians. Critical appraisals of new drugs and comparative reviews of drugs for common diseases.Micromedex CareNotes for SHC delivers patient education materials across the continuum of care — including pre-care, inpatient, discharge, emergency department, ambulatory, and wellness education. CareNotes are available in both English and Spanish.The key resource for information on dietary supplements, natural medicines, and complementary alternative and integrative therapies. Excellent source for checking interactions.Limit your PubMed search to Cochrane Reviews, AHRQ Evidence Reports, BMJ Clinical Evidence topics, FPIN Clinical Inquiries,and ACP Journal Club article reviews. A specialized PubMed search geared towards helping clinicians quickly access systematic reviews.A specialized PubMed search geared towards helping clinicians quickly access clinical trials.Using the links on this site will get you directly to the ICPSR (Inter-University Consortium for Political and Social Research) and the Roper Center for Public Opinion Research.  Stanford is a member of both.  If you create an individual account with your Stanford affiliation, you will be able to download available datasets on these sites.Population health science requires scientists from different disciplinary backgrounds to combine their knowledge and expertise to answer questions that individual disciplines alone cannot. The Interdisciplinary Association for Population Health Science (IAPHS) was founded to bring them all together.Public health protects and improves the health of individuals, families, communities, and populations, locally and globally.The mission of the Population Health Alliance is to advance the principles of population health improvement, so they become pillars of our healthcare system.

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What is it?

A point-of-care clinical information resource containing succinct and aggressively updated clinical topic reviews.

Provides fulltext access to Lane's resources.

Includes the MEDLINE database, which contains coverage of over 5000 journals and more than 25 million citations for biomedical articles, including, but not limited to, clinical trials, systematic reviews, case reports, and clinical practice guidelines.

Lane RSS feeds (Really Simple Syndication)A medical search engine provides access to 9,000 medical and procedural videos, 1,000 books and over.All online issues of the Journal of the American Medical Association.Nature, the international weekly journal of science.New England Journal of Medicine.Search Ovid databases.Lane Library's DocXpress service obtains article and book chapter PDFs as well as print book loans from other libraries at no cost to School of Medicine affiliated users as well as scans PDFs of articles or book chapters from Lane's print collection for a small fee.
Derived from Current Medical Diagnosis & Treatment, AccessMedicine's Quick Medical Diagnosis & Treatment provides topic reviews with key diagnostic and treatment features for more than 500 diseases.

A repository of medical knowledge from internal medicine, cardiology, genetics, pharmacy, diagnosis and management, basic sciences, patient care, and more.

Continuously expanding, all databases in the repository contain the latest editions of selected medical titles.

MicroMedex: Premier pharmaceutical information source containing multiple databases and drug reference tools. Of particular value is DRUGDEX Evaluations, one of the most comprehensive drug sources available.DynaMed Plus is a clinical information resource used to answer questions quickly at the point-of-care. Easy-to-interpret Levels of Evidence help clinicians rapidly determine the quality of the available evidence. Scopus is the largest abstract and citation database of peer-reviewed literature: scientific journals, books and conference proceedings.A drug information resource containing: American Hospital Formulary System (AHFS), drug formulary for Lucile Packard Children's Hospital (LPCH) and Stanford Hospital & Clinics (SHC), Lexi-Drugs (adverse reactions, dosage and administration, mechanism of action, storage, use, and administration information), Lexi-Calc, Lexi-ID, Lexi-I.V. Compatibility (King Guide), Lexi-Interact, and Lexi-PALS.Cumulative Index to Nursing and Allied Health Literature (CINAHL) contains coverage of nursing and allied health literature.A knowledge database that provides access to topic reviews based on over 6000 clinically relevant articles. The evidence-based content, updated regularly, provides the latest practice guidelines in 59 medical specialties.Provides critical assessments of systematic reviews compiled from a variety of medical journals.Selects from the biomedical literature original studies and systematic reviews that are immediately clinically relevant and then summarizes these articles in an enhanced abstract with expert commentary.

Multidisciplinary coverage of over 10,000 high-impact journals in the sciences, social sciences, and arts and humanities, as well as international proceedings coverage for over 120,000 conferences.

Includes cited reference searching, citation maps, and an analyze tool.

Features systematic reviews that summarize the effects of interventions and makes a determination whether the intervention is efficacious or not.

Cochrane reviews are created through a strict process of compiling and analyzing data from multiple randomized control trials to ensure comprehensiveness and reliability.

Provides systematic coverage of the psychological literature from the 1800s to the present through articles, book chapters and dissertations.BMJ Clinical Evidence. A clinical information tool built around systematic reviews summarizing the current state of knowledge about prevention and treatment of clinical conditions.PIER (Physicians' Information and Education Resource) is a Web-based decision-support tool designed for rapid point-of-care delivery of up-to-date, evidence-based guidance for primary care physicians.Cochrane Central Register of Controlled Trials (CENTRAL) provides access to 300,000 controlled trials that have been identified the Cochrane Collaboration.Provides drug information targeted for patients.A continually updating drug monograph.The National Guideline Clearinghouse (NGC): A comprehensive database of evidence-based clinical practice guidelines and related documents.MedlinePlus: A repository of health information from the National Library of Medicine. Links are from trusted sites. No advertising, no endorsement of commercial companies or productsLPCH CareNotes via MicroMedex: Patient education handouts customized by LPCH clinical staffMicromedex Lab Advisor: Evidence based laboratory test informationA drug database organized by generic name, trade name and drug class.LPCH / Stanford Hospital Formulary.A goldmine of trusted consumer health information from the world's largest medical library.A trusted source of expert advice for and about kids, providing the information necessary to help patients and parents understand their unique needs.Provides patient handouts from the American Academy of Family Physician.Access to the Stanford Health Library for patients.Lane provides access to over 5,000 eBooks many of which provide helpful background material that will prepare you to better tackle primary literature.

Largest, broadest eBook package; covers all sciences, as well as technology (including software), medicine, and humanities.

In addition to covering Wiley and Springer, MyiLibrary is also the only provider for Oxford and Cambridge University Press titles. No seat restrictions.

A collection of biomedical books that can be searched directly by concept, and linked to terms in PubMed abstracts.

A web-based, decision support system for infectious diseases, epidemiology, microbiology and antimicrobial chemotherapy. The database, updated weekly, currently includes 337 diseases, 224 countries, 1,147 microbial taxa and 306 antibacterial (-fungal, -parasitic, -viral) agents and vaccines.

Over 10,000 notes outline the status of specific infections within each country.

Stanford Medicine

Lane Medical Library

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